Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7090 and GFF7091 are separated by 8 nucleotides GFF7091 and GFF7092 overlap by 4 nucleotides GFF7092 and GFF7093 are separated by 524 nucleotides GFF7093 and GFF7094 are separated by 52 nucleotides GFF7094 and GFF7095 are separated by 54 nucleotides GFF7095 and GFF7096 are separated by 72 nucleotides
GFF7090 - Small subunit naph/bph dioxygenase, at 12,773 to 13,366
GFF7090
GFF7091 - no description, at 13,375 to 13,554
GFF7091
GFF7092 - no description, at 13,551 to 13,703
GFF7092
GFF7093 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 14,228 to 14,380
GFF7093
GFF7094 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 14,433 to 14,618
GFF7094
GFF7095 - BUG/TctC family periplasmic protein, at 14,673 to 14,948
GFF7095
GFF7096 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52), at 15,021 to 15,842
GFF7096
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.233 kb on - strand, within GFF7090 at 13.241 kb on + strand, within GFF7090 at 13.241 kb on + strand, within GFF7090 at 13.242 kb on - strand, within GFF7090 at 13.332 kb on + strand at 13.332 kb on + strand at 13.332 kb on + strand at 13.333 kb on - strand at 13.333 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.395 kb on + strand, within GFF7091 at 13.409 kb on + strand, within GFF7091 at 13.410 kb on - strand, within GFF7091 at 13.449 kb on - strand, within GFF7091 at 13.602 kb on + strand, within GFF7092 at 13.602 kb on + strand, within GFF7092 at 13.603 kb on - strand, within GFF7092 at 13.603 kb on - strand, within GFF7092 at 13.603 kb on - strand, within GFF7092 at 13.603 kb on - strand, within GFF7092 at 13.603 kb on - strand, within GFF7092 at 13.667 kb on + strand, within GFF7092 at 13.667 kb on + strand, within GFF7092 at 13.668 kb on - strand, within GFF7092 at 13.668 kb on - strand, within GFF7092 at 13.668 kb on - strand, within GFF7092 at 13.668 kb on - strand, within GFF7092 at 13.668 kb on - strand, within GFF7092 at 13.779 kb on + strand at 13.779 kb on + strand at 13.779 kb on + strand at 13.780 kb on - strand at 13.780 kb on - strand at 13.783 kb on + strand at 13.784 kb on - strand at 13.784 kb on - strand at 13.784 kb on - strand at 13.784 kb on - strand at 13.784 kb on - strand at 13.841 kb on + strand at 13.842 kb on - strand at 13.842 kb on - strand at 13.842 kb on - strand at 13.842 kb on - strand at 13.854 kb on - strand at 13.871 kb on + strand at 13.872 kb on - strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.949 kb on + strand at 13.950 kb on - strand at 13.950 kb on - strand at 13.950 kb on - strand at 13.950 kb on - strand at 13.990 kb on + strand at 13.990 kb on + strand at 13.990 kb on + strand at 13.990 kb on + strand at 13.990 kb on + strand at 13.991 kb on - strand at 14.003 kb on + strand at 14.003 kb on + strand at 14.004 kb on - strand at 14.004 kb on - strand at 14.167 kb on + strand at 14.167 kb on + strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.168 kb on - strand at 14.250 kb on - strand, within GFF7093 at 14.383 kb on + strand at 14.383 kb on + strand at 14.383 kb on + strand at 14.383 kb on + strand at 14.384 kb on - strand at 14.384 kb on - strand at 14.412 kb on - strand at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.517 kb on + strand, within GFF7094 at 14.518 kb on - strand, within GFF7094 at 14.598 kb on + strand, within GFF7094 at 14.606 kb on - strand at 14.616 kb on + strand at 14.616 kb on + strand at 14.617 kb on - strand at 14.617 kb on - strand at 14.631 kb on + strand at 14.631 kb on + strand at 14.632 kb on - strand at 14.632 kb on - strand at 14.632 kb on - strand at 15.022 kb on + strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.023 kb on - strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.025 kb on + strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.026 kb on - strand at 15.148 kb on + strand, within GFF7096 at 15.148 kb on + strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.149 kb on - strand, within GFF7096 at 15.337 kb on + strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096 at 15.338 kb on - strand, within GFF7096
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 13,233 - GFF7090 0.77 -0.3 13,241 + GFF7090 0.79 -1.0 13,241 + GFF7090 0.79 -0.0 13,242 - GFF7090 0.79 -0.3 13,332 + -0.5 13,332 + +0.1 13,332 + -1.5 13,333 - -0.1 13,333 - -0.8 13,365 - -0.7 13,365 - -0.6 13,395 + GFF7091 0.11 -1.3 13,409 + GFF7091 0.19 +0.1 13,410 - GFF7091 0.19 -0.1 13,449 - GFF7091 0.41 -1.1 13,602 + GFF7092 0.33 +0.8 13,602 + GFF7092 0.33 -0.3 13,603 - GFF7092 0.34 +0.7 13,603 - GFF7092 0.34 -0.3 13,603 - GFF7092 0.34 +0.9 13,603 - GFF7092 0.34 +0.1 13,603 - GFF7092 0.34 -0.0 13,667 + GFF7092 0.76 -1.2 13,667 + GFF7092 0.76 -0.0 13,668 - GFF7092 0.76 -1.1 13,668 - GFF7092 0.76 -0.0 13,668 - GFF7092 0.76 -0.4 13,668 - GFF7092 0.76 -0.2 13,668 - GFF7092 0.76 -0.4 13,779 + -0.9 13,779 + -0.4 13,779 + -0.5 13,780 - -0.9 13,780 - -0.0 13,783 + +0.3 13,784 - -0.6 13,784 - -1.8 13,784 - -2.4 13,784 - +1.1 13,784 - +0.4 13,841 + -0.8 13,842 - +0.5 13,842 - -0.1 13,842 - -1.4 13,842 - -0.7 13,854 - -0.0 13,871 + -1.2 13,872 - -0.6 13,895 + -0.1 13,895 + +1.3 13,895 + -0.8 13,895 + +0.2 13,895 + +0.9 13,895 + -0.0 13,896 - +0.6 13,896 - -0.2 13,896 - -0.4 13,949 + -0.5 13,950 - +0.5 13,950 - -1.2 13,950 - +1.4 13,950 - -0.7 13,990 + -0.1 13,990 + -0.7 13,990 + -0.3 13,990 + +0.7 13,990 + -1.5 13,991 - -0.2 14,003 + +0.1 14,003 + -0.1 14,004 - +0.0 14,004 - -0.7 14,167 + +0.8 14,167 + +1.0 14,168 - -0.8 14,168 - -0.4 14,168 - +0.0 14,168 - +2.4 14,168 - +0.3 14,168 - -1.0 14,168 - +0.3 14,250 - GFF7093 0.14 -1.1 14,383 + -0.7 14,383 + -0.2 14,383 + -1.8 14,383 + -0.6 14,384 - -0.4 14,384 - +0.1 14,412 - -0.2 14,517 + GFF7094 0.45 -0.3 14,517 + GFF7094 0.45 -0.5 14,517 + GFF7094 0.45 -0.4 14,517 + GFF7094 0.45 +0.4 14,518 - GFF7094 0.46 -0.9 14,598 + GFF7094 0.89 -0.5 14,606 - -0.0 14,616 + -0.5 14,616 + +0.1 14,617 - +0.1 14,617 - -0.3 14,631 + +0.0 14,631 + -0.6 14,632 - +0.5 14,632 - +0.6 14,632 - +1.3 15,022 + -0.6 15,023 - +0.3 15,023 - -1.3 15,023 - -0.2 15,023 - -0.2 15,023 - +1.3 15,023 - -1.2 15,025 + +1.2 15,025 + +0.1 15,025 + +0.7 15,025 + -1.3 15,025 + -1.4 15,025 + -0.5 15,026 - -0.8 15,026 - -1.2 15,026 - +0.5 15,026 - -0.5 15,026 - -0.4 15,026 - -0.1 15,026 - -0.9 15,026 - +0.3 15,148 + GFF7096 0.15 +1.0 15,148 + GFF7096 0.15 -0.5 15,149 - GFF7096 0.16 -1.2 15,149 - GFF7096 0.16 +0.5 15,337 + GFF7096 0.38 +1.4 15,338 - GFF7096 0.39 +0.7 15,338 - GFF7096 0.39 -0.2 15,338 - GFF7096 0.39 +0.5 15,338 - GFF7096 0.39 -0.4
Or see this region's nucleotide sequence