Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7023 and GFF7024 are separated by 63 nucleotides GFF7024 and GFF7025 are separated by 11 nucleotides GFF7025 and GFF7026 are separated by 81 nucleotides GFF7026 and GFF7027 are separated by 71 nucleotides
GFF7023 - Metal chaperone, involved in Zn homeostasis, at 40,802 to 41,773
GFF7023
GFF7024 - Histone acetyltransferase HPA2 and related acetyltransferases, at 41,837 to 42,307
GFF7024
GFF7025 - hypothetical protein, at 42,319 to 42,666
GFF7025
GFF7026 - hypothetical protein, at 42,748 to 43,233
GFF7026
GFF7027 - no description, at 43,305 to 43,676
GFF7027
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.918 kb on + strand, within GFF7024 at 41.918 kb on + strand, within GFF7024 at 41.918 kb on + strand, within GFF7024 at 41.918 kb on + strand, within GFF7024 at 41.919 kb on - strand, within GFF7024 at 41.919 kb on - strand, within GFF7024 at 41.919 kb on - strand, within GFF7024 at 41.919 kb on - strand, within GFF7024 at 41.930 kb on + strand, within GFF7024 at 41.930 kb on + strand, within GFF7024 at 41.931 kb on - strand, within GFF7024 at 41.931 kb on - strand, within GFF7024 at 42.002 kb on + strand, within GFF7024 at 42.104 kb on + strand, within GFF7024 at 42.104 kb on + strand, within GFF7024 at 42.255 kb on - strand, within GFF7024 at 42.290 kb on + strand at 42.320 kb on + strand at 42.320 kb on + strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.321 kb on - strand at 42.324 kb on - strand at 42.324 kb on - strand at 42.425 kb on + strand, within GFF7025 at 42.426 kb on - strand, within GFF7025 at 42.459 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.461 kb on + strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.462 kb on - strand, within GFF7025 at 42.471 kb on + strand, within GFF7025 at 42.513 kb on - strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.551 kb on + strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.552 kb on - strand, within GFF7025 at 42.623 kb on + strand, within GFF7025 at 42.624 kb on - strand, within GFF7025 at 42.702 kb on + strand at 42.703 kb on - strand at 42.703 kb on - strand at 43.265 kb on + strand at 43.266 kb on - strand at 43.275 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.279 kb on - strand at 43.279 kb on - strand at 43.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 41,918 + GFF7024 0.17 -0.3 41,918 + GFF7024 0.17 +2.7 41,918 + GFF7024 0.17 -0.1 41,918 + GFF7024 0.17 +2.0 41,919 - GFF7024 0.17 -1.1 41,919 - GFF7024 0.17 -0.1 41,919 - GFF7024 0.17 +0.5 41,919 - GFF7024 0.17 +0.2 41,930 + GFF7024 0.20 +0.3 41,930 + GFF7024 0.20 +0.7 41,931 - GFF7024 0.20 +0.0 41,931 - GFF7024 0.20 +0.7 42,002 + GFF7024 0.35 +0.1 42,104 + GFF7024 0.57 +0.1 42,104 + GFF7024 0.57 -1.0 42,255 - GFF7024 0.89 -0.0 42,290 + -0.1 42,320 + -0.4 42,320 + +0.1 42,321 - +0.7 42,321 - -0.2 42,321 - +1.3 42,321 - +0.9 42,324 - +0.7 42,324 - -1.2 42,425 + GFF7025 0.30 -0.5 42,426 - GFF7025 0.31 +0.7 42,459 + GFF7025 0.40 -0.4 42,461 + GFF7025 0.41 -0.1 42,461 + GFF7025 0.41 -1.0 42,461 + GFF7025 0.41 -0.1 42,462 - GFF7025 0.41 +0.5 42,462 - GFF7025 0.41 -0.3 42,462 - GFF7025 0.41 -0.6 42,462 - GFF7025 0.41 -0.1 42,462 - GFF7025 0.41 +1.4 42,471 + GFF7025 0.44 -0.2 42,513 - GFF7025 0.56 -0.3 42,551 + GFF7025 0.67 +0.7 42,551 + GFF7025 0.67 -0.5 42,551 + GFF7025 0.67 -0.2 42,552 - GFF7025 0.67 +0.3 42,552 - GFF7025 0.67 -0.1 42,552 - GFF7025 0.67 -0.3 42,552 - GFF7025 0.67 -0.7 42,623 + GFF7025 0.87 -0.4 42,624 - GFF7025 0.88 -0.7 42,702 + -0.5 42,703 - -0.3 42,703 - +0.3 43,265 + -1.3 43,266 - -0.7 43,275 + -0.3 43,278 + -1.5 43,278 + +0.1 43,278 + -2.1 43,278 + -0.9 43,278 + +0.1 43,279 - -0.5 43,279 - -0.5 43,279 - +0.1
Or see this region's nucleotide sequence