Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7011 and GFF7012 overlap by 8 nucleotides GFF7012 and GFF7013 are separated by 53 nucleotides
GFF7011 - Taurine ABC transporter, permease protein TauC, at 26,614 to 27,510
GFF7011
GFF7012 - Taurine ABC transporter, ATP-binding protein TauB, at 27,503 to 28,291
GFF7012
GFF7013 - Taurine ABC transporter, substrate-binding protein TauA, at 28,345 to 29,355
GFF7013
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1 at 25.785 kb on + strand at 26.043 kb on + strand at 26.043 kb on + strand at 26.043 kb on + strand at 26.044 kb on - strand at 26.254 kb on - strand at 26.389 kb on - strand at 26.615 kb on + strand at 26.679 kb on - strand at 26.891 kb on + strand, within GFF7011 at 26.892 kb on - strand, within GFF7011 at 26.910 kb on - strand, within GFF7011 at 27.609 kb on + strand, within GFF7012 at 27.609 kb on + strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.735 kb on + strand, within GFF7012 at 27.894 kb on + strand, within GFF7012 at 27.912 kb on + strand, within GFF7012 at 28.255 kb on - strand at 28.255 kb on - strand at 28.346 kb on + strand at 28.346 kb on + strand at 28.347 kb on - strand at 28.347 kb on - strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 25,785 + +0.3 26,043 + -0.7 26,043 + +0.2 26,043 + -0.3 26,044 - -0.0 26,254 - +0.5 26,389 - +0.4 26,615 + -0.5 26,679 - -0.4 26,891 + GFF7011 0.31 -0.3 26,892 - GFF7011 0.31 -0.4 26,910 - GFF7011 0.33 -1.4 27,609 + GFF7012 0.13 +0.4 27,609 + GFF7012 0.13 -1.1 27,650 - GFF7012 0.19 +0.1 27,650 - GFF7012 0.19 +0.1 27,650 - GFF7012 0.19 -0.3 27,735 + GFF7012 0.29 -0.7 27,894 + GFF7012 0.50 +0.0 27,912 + GFF7012 0.52 +0.1 28,255 - -0.6 28,255 - +0.2 28,346 + +0.2 28,346 + -1.4 28,347 - +0.2 28,347 - -0.3 28,370 + -0.2 28,370 + +0.5 28,395 - +0.7
Or see this region's nucleotide sequence