Strain Fitness in Variovorax sp. SCN45 around GFF694

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF693 and GFF694 are separated by 18 nucleotidesGFF694 and GFF695 overlap by 4 nucleotidesGFF695 and GFF696 are separated by 164 nucleotides GFF693 - BUG/TctC family periplasmic protein, at 748,310 to 749,326 GFF693 GFF694 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 749,345 to 750,208 GFF694 GFF695 - Cytochrome B561, at 750,205 to 750,777 GFF695 GFF696 - Glycosyl transferase, group 2 family, at 750,942 to 752,372 GFF696 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2at 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.673 kb on + strand, within GFF693at 748.674 kb on - strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.216 kb on + strand, within GFF693at 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.395 kb on - strandat 749.395 kb on - strandat 749.748 kb on - strand, within GFF694at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.675 kb on - strand, within GFF695at 750.758 kb on + strandat 750.758 kb on + strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.876 kb on + strandat 750.876 kb on + strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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748,607 + GFF693 0.29 -1.8
748,607 + GFF693 0.29 +0.4
748,607 + GFF693 0.29 -0.1
748,619 + GFF693 0.30 +1.1
748,619 + GFF693 0.30 -0.2
748,619 + GFF693 0.30 +0.1
748,619 + GFF693 0.30 -0.1
748,619 + GFF693 0.30 +0.5
748,619 + GFF693 0.30 -0.5
748,619 + GFF693 0.30 -0.3
748,619 + GFF693 0.30 -1.2
748,619 + GFF693 0.30 +0.9
748,619 + GFF693 0.30 -1.9
748,619 + GFF693 0.30 +0.5
748,619 + GFF693 0.30 -0.5
748,619 + GFF693 0.30 -0.1
748,619 + GFF693 0.30 -0.2
748,620 - GFF693 0.30 +0.3
748,620 - GFF693 0.30 -1.3
748,620 - GFF693 0.30 -1.6
748,620 - GFF693 0.30 -1.1
748,620 - GFF693 0.30 +0.0
748,620 - GFF693 0.30 -1.6
748,620 - GFF693 0.30 -0.9
748,673 + GFF693 0.36 -0.4
748,674 - GFF693 0.36 +0.1
748,781 + GFF693 0.46 +0.1
748,781 + GFF693 0.46 -1.4
748,781 + GFF693 0.46 -0.1
748,781 + GFF693 0.46 -0.4
748,781 + GFF693 0.46 -0.6
748,781 + GFF693 0.46 +0.2
748,781 + GFF693 0.46 -1.0
748,782 - GFF693 0.46 -1.6
748,782 - GFF693 0.46 -0.0
748,782 - GFF693 0.46 -0.5
748,782 - GFF693 0.46 -1.1
748,782 - GFF693 0.46 -0.3
748,811 + GFF693 0.49 -0.3
748,811 + GFF693 0.49 -0.4
748,811 + GFF693 0.49 -0.8
748,811 + GFF693 0.49 +0.0
748,811 + GFF693 0.49 -0.4
748,811 + GFF693 0.49 -0.4
748,811 + GFF693 0.49 +1.2
748,811 + GFF693 0.49 +0.3
748,811 + GFF693 0.49 +0.4
748,811 + GFF693 0.49 -0.2
748,811 + GFF693 0.49 -0.7
748,811 + GFF693 0.49 -1.2
748,811 + GFF693 0.49 -1.2
748,811 + GFF693 0.49 -0.4
748,812 - GFF693 0.49 -1.8
748,812 - GFF693 0.49 -0.9
748,812 - GFF693 0.49 +0.4
748,812 - GFF693 0.49 -0.3
748,812 - GFF693 0.49 -1.1
748,812 - GFF693 0.49 +0.6
748,812 - GFF693 0.49 -2.5
748,812 - GFF693 0.49 -0.2
748,812 - GFF693 0.49 +0.7
748,812 - GFF693 0.49 -0.3
748,812 - GFF693 0.49 -0.1
748,812 - GFF693 0.49 +0.5
748,847 + GFF693 0.53 +0.9
748,847 + GFF693 0.53 -1.2
748,847 + GFF693 0.53 -0.1
748,847 + GFF693 0.53 -0.6
748,847 + GFF693 0.53 -0.7
748,848 - GFF693 0.53 -1.1
748,848 - GFF693 0.53 -0.5
748,848 - GFF693 0.53 +0.3
748,848 - GFF693 0.53 +0.0
748,848 - GFF693 0.53 +0.2
748,848 - GFF693 0.53 -1.4
748,848 - GFF693 0.53 +1.2
748,898 + GFF693 0.58 -0.4
748,898 + GFF693 0.58 +0.3
748,898 + GFF693 0.58 +0.6
748,898 + GFF693 0.58 +0.7
748,898 + GFF693 0.58 -0.2
748,898 + GFF693 0.58 -0.1
748,899 - GFF693 0.58 +0.1
748,899 - GFF693 0.58 -0.2
748,949 + GFF693 0.63 +0.0
748,949 + GFF693 0.63 -0.5
748,949 + GFF693 0.63 -0.4
748,949 + GFF693 0.63 -0.1
748,950 - GFF693 0.63 -0.9
748,950 - GFF693 0.63 -0.2
748,950 - GFF693 0.63 +1.8
748,950 - GFF693 0.63 +1.8
748,952 + GFF693 0.63 -0.0
748,952 + GFF693 0.63 -0.4
748,952 + GFF693 0.63 -0.3
748,952 + GFF693 0.63 +0.7
748,953 - GFF693 0.63 -1.9
748,953 - GFF693 0.63 +0.6
748,953 - GFF693 0.63 -1.5
748,953 - GFF693 0.63 -0.6
748,953 - GFF693 0.63 +0.8
748,953 - GFF693 0.63 +0.1
748,953 - GFF693 0.63 -1.0
749,001 + GFF693 0.68 -0.2
749,001 + GFF693 0.68 +0.2
749,001 + GFF693 0.68 +0.1
749,001 + GFF693 0.68 +0.6
749,001 + GFF693 0.68 +0.1
749,002 - GFF693 0.68 +0.1
749,002 - GFF693 0.68 +0.1
749,002 - GFF693 0.68 +0.2
749,002 - GFF693 0.68 -0.1
749,002 - GFF693 0.68 +1.0
749,111 + GFF693 0.79 +0.2
749,111 + GFF693 0.79 -0.3
749,111 + GFF693 0.79 -0.1
749,112 - GFF693 0.79 -1.1
749,112 - GFF693 0.79 -0.4
749,216 + GFF693 0.89 -0.4
749,270 + +0.2
749,270 + +0.8
749,270 + +1.1
749,270 + -0.5
749,270 + -0.4
749,270 + -0.6
749,270 + -0.5
749,270 + -0.5
749,270 + -1.1
749,271 - -1.0
749,271 - +1.2
749,271 - +0.2
749,271 - -0.4
749,271 - +0.0
749,394 + -0.2
749,394 + -0.6
749,394 + -0.4
749,395 - -0.0
749,395 - -0.1
749,748 - GFF694 0.47 -1.0
750,302 + GFF695 0.17 -0.4
750,302 + GFF695 0.17 -0.6
750,302 + GFF695 0.17 +1.8
750,303 - GFF695 0.17 -0.9
750,303 - GFF695 0.17 -0.9
750,311 + GFF695 0.18 -1.9
750,311 + GFF695 0.18 +0.0
750,311 + GFF695 0.18 -0.8
750,311 + GFF695 0.18 +0.1
750,311 + GFF695 0.18 -1.3
750,312 - GFF695 0.19 +0.0
750,312 - GFF695 0.19 -0.1
750,312 - GFF695 0.19 -1.1
750,312 - GFF695 0.19 -0.6
750,422 + GFF695 0.38 +0.3
750,422 + GFF695 0.38 +0.1
750,422 + GFF695 0.38 -1.3
750,422 + GFF695 0.38 +0.4
750,422 + GFF695 0.38 +0.2
750,422 + GFF695 0.38 +0.2
750,422 + GFF695 0.38 -2.5
750,423 - GFF695 0.38 -0.8
750,423 - GFF695 0.38 +0.6
750,423 - GFF695 0.38 +0.2
750,423 - GFF695 0.38 +0.2
750,423 - GFF695 0.38 +0.0
750,423 - GFF695 0.38 +0.2
750,423 - GFF695 0.38 -1.9
750,423 - GFF695 0.38 -0.2
750,423 - GFF695 0.38 +2.1
750,423 - GFF695 0.38 +0.2
750,423 - GFF695 0.38 -1.1
750,423 - GFF695 0.38 -0.4
750,423 - GFF695 0.38 +0.1
750,500 + GFF695 0.51 -2.4
750,500 + GFF695 0.51 +0.1
750,501 - GFF695 0.52 -0.2
750,501 - GFF695 0.52 -0.4
750,501 - GFF695 0.52 -0.4
750,548 + GFF695 0.60 -0.0
750,548 + GFF695 0.60 -2.2
750,548 + GFF695 0.60 -0.2
750,549 - GFF695 0.60 +0.8
750,549 - GFF695 0.60 -1.0
750,675 - GFF695 0.82 -0.3
750,758 + -0.2
750,758 + +0.6
750,759 - -0.2
750,759 - -0.3
750,759 - -1.2
750,876 + +0.3
750,876 + +0.5
750,877 - -0.4
750,877 - -0.2
750,877 - -0.6
750,877 - -0.7
750,877 - -1.2
750,877 - -1.1
750,877 - +0.6
751,086 + GFF696 0.10 -0.0
751,086 + GFF696 0.10 -0.1
751,086 + GFF696 0.10 +0.1
751,086 + GFF696 0.10 +0.5
751,086 + GFF696 0.10 -2.0
751,086 + GFF696 0.10 -0.5
751,086 + GFF696 0.10 -1.4
751,086 + GFF696 0.10 -0.6
751,086 + GFF696 0.10 -0.0
751,086 + GFF696 0.10 -0.3
751,086 + GFF696 0.10 -2.2
751,086 + GFF696 0.10 -0.4
751,086 + GFF696 0.10 -0.5
751,087 - GFF696 0.10 +0.3
751,087 - GFF696 0.10 +0.9
751,087 - GFF696 0.10 +0.0
751,087 - GFF696 0.10 -0.5
751,087 - GFF696 0.10 -0.6
751,087 - GFF696 0.10 +1.0
751,087 - GFF696 0.10 -0.3
751,087 - GFF696 0.10 -0.7
751,087 - GFF696 0.10 +0.7
751,087 - GFF696 0.10 -0.9
751,087 - GFF696 0.10 +0.5
751,095 + GFF696 0.11 -0.4
751,095 + GFF696 0.11 -0.7
751,095 + GFF696 0.11 -0.4
751,095 + GFF696 0.11 +0.1
751,096 - GFF696 0.11 +0.2
751,096 - GFF696 0.11 -0.9
751,096 - GFF696 0.11 -0.2
751,096 - GFF696 0.11 -0.1

Or see this region's nucleotide sequence