Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6889 and GFF6890 are separated by 34 nucleotides GFF6890 and GFF6891 are separated by 10 nucleotides GFF6891 and GFF6892 are separated by 50 nucleotides GFF6892 and GFF6893 overlap by 4 nucleotides
GFF6889 - Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase, at 22,672 to 23,874
GFF6889
GFF6890 - Threonine efflux protein, at 23,909 to 24,547
GFF6890
GFF6891 - Phenazine biosynthesis protein PhzF like, at 24,558 to 25,394
GFF6891
GFF6892 - Uncharacterized glutathione S-transferase-like protein, at 25,445 to 26,086
GFF6892
GFF6893 - Phenazine biosynthesis protein PhzF like, at 26,083 to 27,015
GFF6893
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.722 kb on + strand, within GFF6889 at 23.723 kb on - strand, within GFF6889 at 23.723 kb on - strand, within GFF6889 at 23.723 kb on - strand, within GFF6889 at 23.723 kb on - strand, within GFF6889 at 23.723 kb on - strand, within GFF6889 at 24.140 kb on + strand, within GFF6890 at 24.140 kb on + strand, within GFF6890 at 24.155 kb on + strand, within GFF6890 at 24.155 kb on + strand, within GFF6890 at 24.155 kb on + strand, within GFF6890 at 24.155 kb on + strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.156 kb on - strand, within GFF6890 at 24.735 kb on + strand, within GFF6891 at 24.735 kb on + strand, within GFF6891 at 24.735 kb on + strand, within GFF6891 at 24.736 kb on - strand, within GFF6891 at 25.077 kb on + strand, within GFF6891 at 25.077 kb on + strand, within GFF6891 at 25.078 kb on - strand, within GFF6891 at 25.197 kb on + strand, within GFF6891 at 25.197 kb on + strand, within GFF6891 at 25.255 kb on + strand, within GFF6891 at 25.574 kb on + strand, within GFF6892 at 25.574 kb on + strand, within GFF6892 at 25.575 kb on - strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.670 kb on + strand, within GFF6892 at 25.704 kb on - strand, within GFF6892 at 25.704 kb on - strand, within GFF6892 at 25.803 kb on + strand, within GFF6892 at 25.804 kb on - strand, within GFF6892 at 25.804 kb on - strand, within GFF6892 at 25.907 kb on + strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.908 kb on - strand, within GFF6892 at 25.991 kb on + strand, within GFF6892 at 26.027 kb on + strand at 26.027 kb on + strand at 26.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 23,722 + GFF6889 0.87 +0.3 23,723 - GFF6889 0.87 -0.7 23,723 - GFF6889 0.87 -1.2 23,723 - GFF6889 0.87 +0.5 23,723 - GFF6889 0.87 -0.7 23,723 - GFF6889 0.87 -0.7 24,140 + GFF6890 0.36 +0.9 24,140 + GFF6890 0.36 +0.3 24,155 + GFF6890 0.38 -0.9 24,155 + GFF6890 0.38 -2.7 24,155 + GFF6890 0.38 -1.7 24,155 + GFF6890 0.38 +0.1 24,156 - GFF6890 0.39 -0.4 24,156 - GFF6890 0.39 +0.5 24,156 - GFF6890 0.39 -0.0 24,156 - GFF6890 0.39 +0.9 24,156 - GFF6890 0.39 -1.4 24,156 - GFF6890 0.39 -0.6 24,156 - GFF6890 0.39 -0.5 24,156 - GFF6890 0.39 +0.1 24,735 + GFF6891 0.21 -1.2 24,735 + GFF6891 0.21 -0.8 24,735 + GFF6891 0.21 -0.9 24,736 - GFF6891 0.21 -0.7 25,077 + GFF6891 0.62 -1.3 25,077 + GFF6891 0.62 -0.4 25,078 - GFF6891 0.62 +1.4 25,197 + GFF6891 0.76 -1.1 25,197 + GFF6891 0.76 -3.5 25,255 + GFF6891 0.83 -1.2 25,574 + GFF6892 0.20 -0.2 25,574 + GFF6892 0.20 +0.3 25,575 - GFF6892 0.20 -0.2 25,670 + GFF6892 0.35 -0.7 25,670 + GFF6892 0.35 -0.1 25,670 + GFF6892 0.35 +0.9 25,704 - GFF6892 0.40 +0.6 25,704 - GFF6892 0.40 -0.0 25,803 + GFF6892 0.56 -0.2 25,804 - GFF6892 0.56 -0.2 25,804 - GFF6892 0.56 +0.1 25,907 + GFF6892 0.72 +0.3 25,908 - GFF6892 0.72 -1.8 25,908 - GFF6892 0.72 -0.1 25,908 - GFF6892 0.72 -0.3 25,908 - GFF6892 0.72 -0.3 25,991 + GFF6892 0.85 -0.5 26,027 + -2.5 26,027 + -0.1 26,140 + -0.7
Or see this region's nucleotide sequence