Strain Fitness in Variovorax sp. SCN45 around GFF6776

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
22,056	+		GFF6775	0.16	-0.2
22,102	-		GFF6775	0.22	+0.7
22,102	-		GFF6775	0.22	+0.1
22,427	+		GFF6775	0.58	-0.1
22,427	+		GFF6775	0.58	+0.1
22,428	-		GFF6775	0.58	-1.3
22,428	-		GFF6775	0.58	+0.9
22,497	+		GFF6775	0.66	-0.4
22,497	+		GFF6775	0.66	-0.1
22,497	+		GFF6775	0.66	-0.5
22,575	+		GFF6775	0.75	-0.5
22,575	+		GFF6775	0.75	+0.6
22,575	+		GFF6775	0.75	+0.2
22,575	+		GFF6775	0.75	+2.4
22,576	-		GFF6775	0.75	+0.9
22,632	+		GFF6775	0.81	-0.6
22,632	+		GFF6775	0.81	-0.5
22,632	+		GFF6775	0.81	-0.7
22,696	-		GFF6775	0.88	+0.2
22,756	+				-1.0
22,757	-				-0.5
22,771	-				+0.2
22,771	-				-0.3
22,771	-				-1.2
22,771	-				+0.3
22,822	-				-2.1
22,886	+		GFF6776	0.11	-1.3
22,886	+		GFF6776	0.11	-0.9
22,887	-		GFF6776	0.11	+1.7
22,887	-		GFF6776	0.11	+0.5
23,000	+		GFF6776	0.24	-0.0
23,000	+		GFF6776	0.24	+1.2
23,001	-		GFF6776	0.24	-0.5
23,001	-		GFF6776	0.24	-0.3
23,157	-		GFF6776	0.42	+0.7
23,192	+		GFF6776	0.46	-0.4
23,192	+		GFF6776	0.46	-0.9
23,192	+		GFF6776	0.46	-0.9
23,193	-		GFF6776	0.47	+0.7
23,193	-		GFF6776	0.47	-0.5
23,193	-		GFF6776	0.47	-0.0
23,210	+		GFF6776	0.49	-0.7
23,210	+		GFF6776	0.49	+1.3
23,211	-		GFF6776	0.49	+2.7
23,375	+		GFF6776	0.68	+0.6
23,376	-		GFF6776	0.68	-0.8
23,417	+		GFF6776	0.73	-0.5
23,418	-		GFF6776	0.73	-0.4
23,444	+		GFF6776	0.76	+0.7
23,444	+		GFF6776	0.76	+0.1
23,444	+		GFF6776	0.76	+0.4
23,444	+		GFF6776	0.76	-0.2
23,444	+		GFF6776	0.76	-0.3
23,444	+		GFF6776	0.76	-0.8
23,445	-		GFF6776	0.76	-0.3
23,450	+		GFF6776	0.77	-0.2
23,450	+		GFF6776	0.77	-0.1
23,450	+		GFF6776	0.77	+0.3
23,450	+		GFF6776	0.77	-0.6
23,451	-		GFF6776	0.77	-1.6
23,451	-		GFF6776	0.77	-0.1
23,564	+				+0.7
23,564	+				-0.8
23,565	-				-0.6
23,588	+				-0.4
23,588	+				-0.9
23,588	+				-0.3
23,588	+				-0.9
23,589	-				+1.4
23,589	-				-0.2
23,589	-				+0.7
23,589	-				-1.7
23,591	+				-1.4
23,591	+				-0.6
23,591	+				-0.3
23,592	-				-0.2
23,592	-				-0.2
23,592	-				+0.3
23,592	-				-0.2
23,592	-				-0.9
23,606	+				-1.4
23,607	-				-1.2
23,607	-				-1.1
23,920	+		GFF6777	0.23	+0.7
23,920	+		GFF6777	0.23	-1.5
23,920	+		GFF6777	0.23	-1.4
23,921	-		GFF6777	0.23	-0.4
24,235	+		GFF6777	0.53	-0.0
24,236	-		GFF6777	0.53	-1.3
24,236	-		GFF6777	0.53	-0.8
24,236	-		GFF6777	0.53	-0.4
24,334	+		GFF6777	0.62	-0.1
24,334	+		GFF6777	0.62	-0.6
24,334	+		GFF6777	0.62	-1.6
24,335	-		GFF6777	0.62	+0.5
24,503	-		GFF6777	0.78	-0.4