Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6702 and GFF6703 overlap by 8 nucleotides GFF6703 and GFF6704 are separated by 4 nucleotides GFF6704 and GFF6705 are separated by 343 nucleotides
GFF6702 - Lipoprotein releasing system transmembrane protein LolC/LolE, at 11,005 to 12,261
GFF6702
GFF6703 - Lipoprotein-releasing system ATP-binding protein LolD, at 12,254 to 12,931
GFF6703
GFF6704 - no description, at 12,936 to 13,151
GFF6704
GFF6705 - hypothetical protein, at 13,495 to 14,268
GFF6705
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 12.268 kb on - strand at 12.268 kb on - strand at 12.268 kb on - strand at 12.268 kb on - strand at 13.022 kb on + strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.023 kb on - strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.120 kb on + strand, within GFF6704 at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.276 kb on + strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.277 kb on - strand at 13.520 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.728 kb on - strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 14.050 kb on - strand, within GFF6705
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 12,268 - -0.6 12,268 - +0.5 12,268 - -1.5 12,268 - +0.1 13,022 + GFF6704 0.40 +0.5 13,023 - GFF6704 0.40 -1.2 13,023 - GFF6704 0.40 +0.5 13,120 + GFF6704 0.85 -2.0 13,120 + GFF6704 0.85 -0.7 13,276 + -0.4 13,276 + -0.6 13,276 + -1.3 13,276 + -0.3 13,277 - -0.3 13,277 - -0.8 13,277 - -0.3 13,277 - -0.3 13,277 - +0.7 13,277 - -0.1 13,520 + -0.2 13,520 + -0.6 13,521 - +0.2 13,521 - +0.4 13,521 - -1.8 13,521 - +0.0 13,693 + GFF6705 0.26 -0.2 13,693 + GFF6705 0.26 -0.6 13,693 + GFF6705 0.26 -1.1 13,693 + GFF6705 0.26 -0.5 13,693 + GFF6705 0.26 +0.5 13,694 - GFF6705 0.26 -0.3 13,694 - GFF6705 0.26 -0.5 13,728 - GFF6705 0.30 +0.8 13,874 + GFF6705 0.49 -0.6 13,874 + GFF6705 0.49 +1.5 13,874 + GFF6705 0.49 -0.1 13,943 - GFF6705 0.58 -0.1 13,943 - GFF6705 0.58 +2.8 14,050 - GFF6705 0.72 -0.1
Or see this region's nucleotide sequence