Strain Fitness in Variovorax sp. SCN45 around GFF6570

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
10,750	+				-0.4
10,750	+				-1.3
10,750	+				-0.3
10,750	+				-0.9
10,750	+				+0.6
10,750	+				+1.7
10,750	+				+0.5
10,751	-				-0.0
10,751	-				+1.1
10,751	-				+0.2
10,751	-				+0.2
10,751	-				-0.3
10,751	-				+0.5
10,751	-				-1.9
10,751	-				-0.3
10,751	-				+0.5
10,751	-				+1.2
10,797	-				+0.0
10,827	+				+1.5
10,827	+				-0.6
10,828	-				-0.3
10,859	+				+0.5
10,859	+				+1.5
10,859	+				-0.7
10,859	+				-0.4
10,859	+				+1.1
10,859	+				-2.1
10,859	+				-0.3
10,859	+				-0.9
10,859	+				-0.5
10,860	-				-0.7
10,860	-				-2.0
10,860	-				+0.0
10,864	+				-0.5
10,864	+				+1.5
10,864	+				-0.6
10,864	+				-0.1
10,864	+				-1.7
10,864	+				-0.3
10,864	+				-0.5
10,864	+				-0.5
10,864	+				+0.2
10,864	+				+0.0
10,864	+				-0.1
10,865	-				-0.5
10,865	-				+0.9
10,865	-				-0.0
10,865	-				-0.4
10,865	-				-1.7
10,865	-				-1.0
10,865	-				-0.7
10,865	-				-0.1
10,865	-				+0.5
10,865	-				-0.7
10,868	+				-0.1
10,868	+				+0.1
10,868	+				-0.6
10,868	+				-0.3
10,869	-				-0.3
10,874	+				-0.7
10,874	+				+0.5
10,874	+				-0.7
10,874	+				-0.4
10,874	+				-0.5
10,874	+				+0.2
10,874	+				+0.1
10,874	+				+0.4
10,874	+				-1.1
10,874	+				+0.4
10,874	+				+1.1
10,874	+				-0.1
10,874	+				+0.2
10,875	-				+0.5
10,875	-				-0.4
10,875	-				+0.1
10,875	-				-0.4
10,875	-				-0.9
10,875	-				+0.2
10,875	-				-0.3
10,875	-				-0.1
10,875	-				-1.1
10,875	-				-0.1
10,875	-				+0.8
10,875	-				-0.2
10,875	-				-0.0
10,875	-				-0.2
10,875	-				-0.1
10,875	-				-0.5
10,875	-				-0.5
10,875	-				-1.3
10,875	-				+0.1
10,875	-				-0.1
10,892	-				+0.2
10,892	-				-0.1
10,892	-				+0.0
10,894	+				-0.4
10,895	-				-0.7
10,895	-				+0.4
10,911	-				+0.7
10,911	-				-1.3
10,911	-				+1.5
10,972	+				-0.7
10,972	+				+0.0
10,972	+				+0.6
10,972	+				-0.1
10,972	+				+0.1
10,973	-				-0.1
10,973	-				-0.5
10,973	-				-0.7
10,973	-				-0.0
10,978	+				-0.2
10,979	-				-0.3
10,996	+				+0.5
11,015	+				-1.2
11,062	+				+0.2
11,062	+				-1.8
11,062	+				-1.7
11,062	+				-0.9
11,062	+				+0.3
11,062	+				-0.6
11,062	+				-0.1
11,062	+				-1.0
11,062	+				-0.5
11,063	-				-0.5
11,063	-				-0.5
11,063	-				+0.7
11,063	-				+0.5
11,063	-				+0.2
11,063	-				+1.2
11,063	-				+0.6
11,063	-				-1.4
11,063	-				-0.1
11,063	-				-0.3
11,063	-				+0.2
11,063	-				-0.3
11,063	-				-0.4
11,063	-				-1.0
11,063	-				-1.3
11,063	-				+1.5
11,063	-				+0.9
11,063	-				-0.7
11,063	-				-0.2
11,063	-				-0.4
11,135	+		GFF6569	0.19	+0.2
11,135	+		GFF6569	0.19	+1.5
11,135	+		GFF6569	0.19	-0.1
11,135	+		GFF6569	0.19	-0.7
11,135	+		GFF6569	0.19	+0.2
11,135	+		GFF6569	0.19	-2.1
11,135	+		GFF6569	0.19	+0.5
11,136	-		GFF6569	0.20	-0.2
11,136	-		GFF6569	0.20	-1.5
11,136	-		GFF6569	0.20	-0.2
11,136	-		GFF6569	0.20	-0.6
11,136	-		GFF6569	0.20	-1.1
11,136	-		GFF6569	0.20	-0.7
11,198	+		GFF6569	0.31	+1.2
11,198	+		GFF6569	0.31	-0.2
11,198	+		GFF6569	0.31	+0.3
11,198	+		GFF6569	0.31	-0.5
11,198	+		GFF6569	0.31	+1.5
11,198	+		GFF6569	0.31	-1.5
11,198	+		GFF6569	0.31	-0.5
11,199	-		GFF6569	0.31	+1.5
11,199	-		GFF6569	0.31	-0.4
11,199	-		GFF6569	0.31	+2.3
11,199	-		GFF6569	0.31	-0.4
11,207	+		GFF6569	0.33	-0.2
11,207	+		GFF6569	0.33	-0.1
11,207	+		GFF6569	0.33	+0.5
11,207	+		GFF6569	0.33	-0.9
11,207	+		GFF6569	0.33	-0.1
11,207	+		GFF6569	0.33	-0.1
11,207	+		GFF6569	0.33	+0.1
11,207	+		GFF6569	0.33	+0.9
11,207	+		GFF6569	0.33	+0.4
11,207	+		GFF6569	0.33	-1.3
11,207	+		GFF6569	0.33	+1.1
11,207	+		GFF6569	0.33	-1.1
11,207	+		GFF6569	0.33	-1.7
11,207	+		GFF6569	0.33	+0.4
11,207	+		GFF6569	0.33	+0.9
11,207	+		GFF6569	0.33	-0.2
11,207	+		GFF6569	0.33	-2.7
11,208	-		GFF6569	0.33	+2.0
11,208	-		GFF6569	0.33	+0.4
11,208	-		GFF6569	0.33	-1.2
11,208	-		GFF6569	0.33	-1.2
11,208	-		GFF6569	0.33	+0.5
11,208	-		GFF6569	0.33	-0.1
11,208	-		GFF6569	0.33	-1.3
11,208	-		GFF6569	0.33	+0.9
11,208	-		GFF6569	0.33	-0.9
11,208	-		GFF6569	0.33	-0.4
11,208	-		GFF6569	0.33	+0.5
11,208	-		GFF6569	0.33	+0.5
11,208	-		GFF6569	0.33	+0.2
11,208	-		GFF6569	0.33	+0.3
11,208	-		GFF6569	0.33	-0.3
11,208	-		GFF6569	0.33	+0.0
11,208	-		GFF6569	0.33	+1.0
11,208	-		GFF6569	0.33	-1.9
11,375	+		GFF6569	0.63	-1.3
11,375	+		GFF6569	0.63	-1.0
11,376	-		GFF6569	0.64	-0.2
11,376	-		GFF6569	0.64	-0.3
11,424	+		GFF6569	0.72	-0.4
11,424	+		GFF6569	0.72	+1.0
11,506	+		GFF6569	0.87	-0.3
11,506	+		GFF6569	0.87	+0.5
11,506	+		GFF6569	0.87	-0.1
11,506	+		GFF6569	0.87	+0.0
11,507	-		GFF6569	0.88	+1.0
11,507	-		GFF6569	0.88	-0.1
11,507	-		GFF6569	0.88	+0.1
11,507	-		GFF6569	0.88	+0.5
11,507	-		GFF6569	0.88	-1.3
11,534	+				-0.2
11,534	+				+0.2
11,534	+				-0.7
11,534	+				-0.5
11,534	+				+0.0
11,534	+				-0.1
11,534	+				-1.1
11,534	+				-0.7
11,534	+				+1.0
11,534	+				+1.1
11,535	-				-0.2
11,535	-				+0.1
11,535	-				+0.5
11,535	-				-1.1
11,535	-				-0.3
11,535	-				-1.2
11,535	-				-1.1
11,535	-				+0.0
11,535	-				-0.1
11,535	-				+0.6
11,535	-				+1.5
11,629	+				-1.1
11,629	+				-1.0
11,629	+				-1.5
11,630	-				+1.0
11,630	-				+2.2
11,630	-				-0.3
11,828	+		GFF6570	0.54	-1.9
11,828	+		GFF6570	0.54	-0.3
11,852	+		GFF6570	0.63	+0.2
11,852	+		GFF6570	0.63	-0.1
11,960	+				+1.5
11,990	-				+0.4
11,990	-				-0.5
12,268	+		GFF6571	0.25	+0.2
12,385	+		GFF6571	0.34	-1.1
12,386	-		GFF6571	0.34	+0.4
12,386	-		GFF6571	0.34	-0.5
12,445	+		GFF6571	0.39	+0.9
12,445	+		GFF6571	0.39	-0.4
12,445	+		GFF6571	0.39	+0.1
12,590	+		GFF6571	0.50	-0.0
12,591	-		GFF6571	0.50	-0.2
12,856	+		GFF6571	0.71	-0.2
12,856	+		GFF6571	0.71	-0.1
12,856	+		GFF6571	0.71	+0.6
12,856	+		GFF6571	0.71	-1.3
12,856	+		GFF6571	0.71	-1.1
12,857	-		GFF6571	0.71	-1.0
12,857	-		GFF6571	0.71	-0.9
12,857	-		GFF6571	0.71	+0.4