Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF651 and GFF652 are separated by 91 nucleotides GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 156 nucleotides GFF654 and GFF655 are separated by 18 nucleotides
GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175
GFF651
GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905
GFF652
GFF653 - no description, at 704,902 to 705,318
GFF653
GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236
GFF654
GFF655 - hypothetical protein, at 706,255 to 706,674
GFF655
Position (kb) 704
705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 704.216 kb on - strand at 704.216 kb on - strand at 704.216 kb on - strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.268 kb on + strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.269 kb on - strand at 704.440 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.645 kb on + strand, within GFF652 at 704.646 kb on - strand, within GFF652 at 704.778 kb on + strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.357 kb on + strand at 705.357 kb on + strand at 705.358 kb on - strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.414 kb on - strand at 705.414 kb on - strand at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.814 kb on + strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 706.243 kb on + strand at 706.265 kb on + strand at 706.265 kb on + strand at 706.266 kb on - strand at 706.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 704,216 - -0.1 704,216 - +0.5 704,216 - +4.4 704,268 + -0.2 704,268 + -1.6 704,268 + -1.1 704,268 + -0.8 704,269 - -0.5 704,269 - -1.2 704,269 - -0.2 704,269 - -1.8 704,440 - GFF652 0.27 -1.3 704,521 - GFF652 0.40 +0.0 704,521 - GFF652 0.40 +0.6 704,521 - GFF652 0.40 +0.3 704,521 - GFF652 0.40 -0.6 704,521 - GFF652 0.40 -1.4 704,645 + GFF652 0.59 -0.8 704,646 - GFF652 0.59 -0.8 704,778 + GFF652 0.80 +0.1 704,779 - GFF652 0.80 -0.7 704,779 - GFF652 0.80 -0.7 704,779 - GFF652 0.80 -0.2 705,059 + GFF653 0.38 +0.6 705,059 + GFF653 0.38 -0.9 705,059 + GFF653 0.38 -0.5 705,059 + GFF653 0.38 -1.0 705,059 + GFF653 0.38 -2.9 705,060 - GFF653 0.38 -0.5 705,060 - GFF653 0.38 -1.3 705,060 - GFF653 0.38 -0.4 705,060 - GFF653 0.38 -1.0 705,357 + +0.5 705,357 + -0.5 705,358 - -0.6 705,397 + -0.2 705,397 + -0.1 705,397 + -0.4 705,398 - +0.3 705,398 - +0.1 705,398 - +1.2 705,398 - +0.1 705,398 - -0.4 705,398 - -2.7 705,413 + -0.4 705,413 + -0.2 705,413 + +0.4 705,414 - +0.7 705,414 - -0.4 705,793 + GFF654 0.42 +0.6 705,793 + GFF654 0.42 -0.6 705,793 + GFF654 0.42 -0.4 705,793 + GFF654 0.42 +0.7 705,794 - GFF654 0.42 -0.3 705,794 - GFF654 0.42 -0.4 705,794 - GFF654 0.42 -0.6 705,794 - GFF654 0.42 -1.4 705,814 + GFF654 0.44 +0.6 705,815 - GFF654 0.45 +0.4 705,815 - GFF654 0.45 -1.4 705,815 - GFF654 0.45 -0.1 705,901 + GFF654 0.56 -0.2 705,901 + GFF654 0.56 -0.6 706,243 + +0.5 706,265 + -0.1 706,265 + +0.3 706,266 - +0.1 706,289 + -0.9
Or see this region's nucleotide sequence