Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6517 and GFF6518 overlap by 4 nucleotides GFF6518 and GFF6519 overlap by 11 nucleotides GFF6519 and GFF6520 are separated by 29 nucleotides GFF6520 and GFF6521 are separated by 21 nucleotides
GFF6517 - Cation transport protein ChaC, at 13,288 to 13,977
GFF6517
GFF6518 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 13,974 to 14,510
GFF6518
GFF6519 - Molybdenum cofactor cytidylyltransferase (EC 2.7.7.76), at 14,500 to 15,078
GFF6519
GFF6520 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 15,108 to 15,761
GFF6520
GFF6521 - Auxin efflux carrier family protein, at 15,783 to 16,736
GFF6521
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.572 kb on - strand, within GFF6517 at 13.618 kb on + strand, within GFF6517 at 13.618 kb on + strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.619 kb on - strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.735 kb on + strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.736 kb on - strand, within GFF6517 at 13.737 kb on + strand, within GFF6517 at 13.738 kb on - strand, within GFF6517 at 13.738 kb on - strand, within GFF6517 at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.910 kb on + strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.911 kb on - strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.912 kb on + strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 13.913 kb on - strand at 14.732 kb on + strand, within GFF6519 at 14.733 kb on - strand, within GFF6519 at 15.087 kb on + strand at 15.087 kb on + strand at 15.087 kb on + strand at 15.087 kb on + strand at 15.087 kb on + strand at 15.087 kb on + strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand at 15.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 13,572 - GFF6517 0.41 -1.6 13,618 + GFF6517 0.48 +0.2 13,618 + GFF6517 0.48 -0.4 13,619 - GFF6517 0.48 -0.9 13,619 - GFF6517 0.48 +0.4 13,619 - GFF6517 0.48 +1.4 13,619 - GFF6517 0.48 -0.6 13,735 + GFF6517 0.65 +0.1 13,735 + GFF6517 0.65 -0.0 13,735 + GFF6517 0.65 +0.1 13,735 + GFF6517 0.65 -0.5 13,735 + GFF6517 0.65 +0.2 13,735 + GFF6517 0.65 -2.1 13,735 + GFF6517 0.65 +0.5 13,735 + GFF6517 0.65 -1.2 13,735 + GFF6517 0.65 -0.9 13,735 + GFF6517 0.65 +0.8 13,735 + GFF6517 0.65 -0.1 13,735 + GFF6517 0.65 -0.1 13,735 + GFF6517 0.65 +0.8 13,736 - GFF6517 0.65 -0.3 13,736 - GFF6517 0.65 +0.4 13,736 - GFF6517 0.65 -0.1 13,736 - GFF6517 0.65 -0.0 13,736 - GFF6517 0.65 -0.3 13,736 - GFF6517 0.65 -0.7 13,737 + GFF6517 0.65 -0.8 13,738 - GFF6517 0.65 -0.3 13,738 - GFF6517 0.65 -0.8 13,910 + +0.2 13,910 + -0.0 13,910 + +0.2 13,910 + -2.1 13,910 + -0.6 13,910 + +0.0 13,910 + +0.1 13,911 - -0.2 13,911 - +0.8 13,911 - -0.3 13,911 - -0.0 13,911 - +2.4 13,911 - +0.0 13,911 - -0.5 13,912 + -0.3 13,912 + -0.7 13,912 + -1.2 13,912 + +0.6 13,912 + -0.3 13,912 + -1.2 13,912 + -2.1 13,912 + -0.6 13,912 + +0.7 13,912 + -0.3 13,912 + -0.9 13,912 + -1.2 13,912 + +0.1 13,913 - -0.3 13,913 - +1.8 13,913 - +0.2 13,913 - -0.1 13,913 - -1.9 13,913 - -0.2 14,732 + GFF6519 0.40 +0.1 14,733 - GFF6519 0.40 +1.0 15,087 + -0.3 15,087 + -0.5 15,087 + -0.0 15,087 + -1.1 15,087 + -0.6 15,087 + +0.2 15,088 - -0.9 15,088 - +0.1 15,088 - +0.2 15,088 - +0.9 15,088 - -0.1 15,088 - -0.7 15,088 - +0.2 15,088 - +0.3 15,088 - -0.7 15,088 - +0.5 15,088 - -0.2 15,088 - -0.5
Or see this region's nucleotide sequence