Strain Fitness in Variovorax sp. SCN45 around GFF6515

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
10,616	+				-1.7
10,617	-				-1.4
10,617	-				-1.3
10,663	+				-0.1
10,663	+				+0.3
10,664	-				-0.1
10,664	-				-0.6
10,664	-				+2.0
11,086	-		GFF6514	0.53	-0.0
11,134	-		GFF6514	0.59	+0.6
11,134	-		GFF6514	0.59	-0.0
11,134	-		GFF6514	0.59	-0.9
11,140	+		GFF6514	0.60	+2.0
11,140	+		GFF6514	0.60	-0.2
11,141	-		GFF6514	0.60	+1.4
11,244	+		GFF6514	0.72	-0.5
11,244	+		GFF6514	0.72	-0.7
11,332	-		GFF6514	0.83	+0.4
11,332	-		GFF6514	0.83	-0.9
11,332	-		GFF6514	0.83	-0.6
11,395	+				-0.9
11,544	+				-0.9
11,594	-				+0.1
11,829	+		GFF6515	0.30	-0.5
11,829	+		GFF6515	0.30	-1.9
11,829	+		GFF6515	0.30	-1.6
11,829	+		GFF6515	0.30	-1.6
11,830	-		GFF6515	0.30	-0.1
12,305	+		GFF6515	0.79	-1.9
12,306	-		GFF6515	0.79	-0.1
12,306	-		GFF6515	0.79	-1.5
12,387	+		GFF6515	0.87	-0.0
12,388	-		GFF6515	0.87	-0.9
12,388	-		GFF6515	0.87	-0.7
12,421	+				-2.6
12,421	+				-0.6
12,421	+				-0.3
12,421	+				+0.0
12,422	-				-0.0
12,422	-				-0.1
12,422	-				+0.4
12,513	+				+1.7
12,513	+				+0.5
12,884	+		GFF6516	0.52	-0.1
12,884	+		GFF6516	0.52	-0.5
12,884	+		GFF6516	0.52	-0.4
12,885	-		GFF6516	0.52	-0.2
12,885	-		GFF6516	0.52	-0.7
12,885	-		GFF6516	0.52	-2.3
13,169	+				+1.4
13,184	+				-0.4
13,185	-				-0.0
13,185	-				+0.0
13,185	-				-0.4
13,185	-				-0.3
13,188	+				-0.9
13,188	+				-0.5
13,188	+				+1.0
13,189	-				+0.1
13,189	-				-0.1
13,220	+				-0.3
13,220	+				-0.0