Strain Fitness in Variovorax sp. SCN45 around GFF6452

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6450 and GFF6451 overlap by 4 nucleotidesGFF6451 and GFF6452 are separated by 11 nucleotidesGFF6452 and GFF6453 overlap by 4 nucleotides GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022 GFF6450 GFF6451 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 28,019 to 28,774 GFF6451 GFF6452 - Putative diheme cytochrome c-553, at 28,786 to 30,180 GFF6452 GFF6453 - Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein, at 30,177 to 31,949 GFF6453 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 27.841 kb on - strand, within GFF6450at 28.265 kb on + strand, within GFF6451at 28.265 kb on + strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.297 kb on - strand, within GFF6451at 28.338 kb on - strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.587 kb on - strand, within GFF6451at 28.648 kb on - strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.772 kb on + strandat 28.773 kb on - strandat 29.126 kb on + strand, within GFF6452at 29.127 kb on - strand, within GFF6452at 29.127 kb on - strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.264 kb on + strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.265 kb on - strand, within GFF6452at 29.445 kb on - strand, within GFF6452at 29.533 kb on - strand, within GFF6452at 29.570 kb on + strand, within GFF6452at 29.571 kb on - strand, within GFF6452at 29.615 kb on + strand, within GFF6452at 29.634 kb on - strand, within GFF6452at 29.787 kb on - strand, within GFF6452at 29.983 kb on + strand, within GFF6452at 29.983 kb on + strand, within GFF6452at 29.984 kb on - strand, within GFF6452at 29.984 kb on - strand, within GFF6452at 30.161 kb on + strandat 30.161 kb on + strandat 30.161 kb on + strandat 30.162 kb on - strandat 30.162 kb on - strandat 30.162 kb on - strandat 30.205 kb on + strandat 30.206 kb on - strandat 30.206 kb on - strandat 30.235 kb on + strandat 30.236 kb on - strandat 30.268 kb on + strandat 30.268 kb on + strandat 30.406 kb on + strand, within GFF6453at 30.406 kb on + strand, within GFF6453at 30.409 kb on + strand, within GFF6453at 30.409 kb on + strand, within GFF6453at 30.422 kb on - strand, within GFF6453at 30.451 kb on + strand, within GFF6453at 30.580 kb on + strand, within GFF6453at 30.581 kb on - strand, within GFF6453at 30.581 kb on - strand, within GFF6453at 30.581 kb on - strand, within GFF6453at 30.601 kb on + strand, within GFF6453at 30.601 kb on + strand, within GFF6453at 30.601 kb on + strand, within GFF6453at 30.601 kb on + strand, within GFF6453at 30.601 kb on + strand, within GFF6453at 30.602 kb on - strand, within GFF6453at 30.602 kb on - strand, within GFF6453at 30.602 kb on - strand, within GFF6453at 30.614 kb on - strand, within GFF6453at 30.652 kb on + strand, within GFF6453at 30.652 kb on + strand, within GFF6453at 30.653 kb on - strand, within GFF6453at 30.653 kb on - strand, within GFF6453at 30.658 kb on + strand, within GFF6453at 30.658 kb on + strand, within GFF6453at 30.659 kb on - strand, within GFF6453at 30.659 kb on - strand, within GFF6453at 30.659 kb on - strand, within GFF6453at 30.659 kb on - strand, within GFF6453at 30.910 kb on + strand, within GFF6453at 30.910 kb on + strand, within GFF6453at 30.911 kb on - strand, within GFF6453at 30.916 kb on + strand, within GFF6453at 30.916 kb on + strand, within GFF6453at 30.916 kb on + strand, within GFF6453at 30.916 kb on + strand, within GFF6453at 30.917 kb on - strand, within GFF6453at 30.917 kb on - strand, within GFF6453at 30.917 kb on - strand, within GFF6453at 30.917 kb on - strand, within GFF6453at 30.955 kb on + strand, within GFF6453at 30.955 kb on + strand, within GFF6453at 30.956 kb on - strand, within GFF6453at 30.956 kb on - strand, within GFF6453at 30.956 kb on - strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.066 kb on + strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453at 31.067 kb on - strand, within GFF6453

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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27,841 - GFF6450 0.87 -1.6
28,265 + GFF6451 0.33 +0.0
28,265 + GFF6451 0.33 -0.0
28,266 - GFF6451 0.33 -1.4
28,266 - GFF6451 0.33 +0.4
28,266 - GFF6451 0.33 -1.1
28,266 - GFF6451 0.33 -0.5
28,266 - GFF6451 0.33 -2.0
28,266 - GFF6451 0.33 -0.1
28,297 - GFF6451 0.37 -0.4
28,338 - GFF6451 0.42 +0.0
28,586 + GFF6451 0.75 -0.4
28,586 + GFF6451 0.75 -1.4
28,586 + GFF6451 0.75 -1.4
28,587 - GFF6451 0.75 +0.4
28,648 - GFF6451 0.83 +1.0
28,667 + GFF6451 0.86 -0.1
28,667 + GFF6451 0.86 -1.5
28,667 + GFF6451 0.86 -0.4
28,668 - GFF6451 0.86 -0.2
28,668 - GFF6451 0.86 +0.2
28,668 - GFF6451 0.86 -0.6
28,668 - GFF6451 0.86 -1.9
28,668 - GFF6451 0.86 +1.4
28,772 + -0.8
28,773 - +0.1
29,126 + GFF6452 0.24 -0.6
29,127 - GFF6452 0.24 +0.2
29,127 - GFF6452 0.24 +0.4
29,264 + GFF6452 0.34 -0.1
29,264 + GFF6452 0.34 +0.6
29,264 + GFF6452 0.34 +0.4
29,264 + GFF6452 0.34 +1.6
29,265 - GFF6452 0.34 -0.2
29,265 - GFF6452 0.34 -1.7
29,265 - GFF6452 0.34 +0.7
29,445 - GFF6452 0.47 +0.1
29,533 - GFF6452 0.54 +0.2
29,570 + GFF6452 0.56 +0.4
29,571 - GFF6452 0.56 -0.0
29,615 + GFF6452 0.59 -1.3
29,634 - GFF6452 0.61 -0.4
29,787 - GFF6452 0.72 -0.5
29,983 + GFF6452 0.86 -1.1
29,983 + GFF6452 0.86 +0.5
29,984 - GFF6452 0.86 +0.1
29,984 - GFF6452 0.86 +0.1
30,161 + -0.6
30,161 + -0.8
30,161 + -0.0
30,162 - +0.0
30,162 - -0.4
30,162 - +1.0
30,205 + +1.0
30,206 - +0.4
30,206 - +0.6
30,235 + -0.3
30,236 - +0.9
30,268 + -0.6
30,268 + -0.9
30,406 + GFF6453 0.13 +1.0
30,406 + GFF6453 0.13 +0.1
30,409 + GFF6453 0.13 -0.7
30,409 + GFF6453 0.13 -0.9
30,422 - GFF6453 0.14 +1.4
30,451 + GFF6453 0.15 -0.1
30,580 + GFF6453 0.23 -0.8
30,581 - GFF6453 0.23 +0.1
30,581 - GFF6453 0.23 -0.5
30,581 - GFF6453 0.23 -0.1
30,601 + GFF6453 0.24 -0.0
30,601 + GFF6453 0.24 -0.4
30,601 + GFF6453 0.24 -0.6
30,601 + GFF6453 0.24 -1.7
30,601 + GFF6453 0.24 +0.5
30,602 - GFF6453 0.24 -0.5
30,602 - GFF6453 0.24 -1.6
30,602 - GFF6453 0.24 -0.4
30,614 - GFF6453 0.25 +0.4
30,652 + GFF6453 0.27 -0.5
30,652 + GFF6453 0.27 -0.1
30,653 - GFF6453 0.27 +1.0
30,653 - GFF6453 0.27 -0.7
30,658 + GFF6453 0.27 +0.3
30,658 + GFF6453 0.27 +0.4
30,659 - GFF6453 0.27 -1.0
30,659 - GFF6453 0.27 -0.3
30,659 - GFF6453 0.27 -0.1
30,659 - GFF6453 0.27 -0.3
30,910 + GFF6453 0.41 +1.1
30,910 + GFF6453 0.41 -0.9
30,911 - GFF6453 0.41 +0.7
30,916 + GFF6453 0.42 +0.3
30,916 + GFF6453 0.42 -0.6
30,916 + GFF6453 0.42 -0.9
30,916 + GFF6453 0.42 +1.4
30,917 - GFF6453 0.42 +0.2
30,917 - GFF6453 0.42 +0.8
30,917 - GFF6453 0.42 -0.9
30,917 - GFF6453 0.42 +1.6
30,955 + GFF6453 0.44 -0.3
30,955 + GFF6453 0.44 +0.1
30,956 - GFF6453 0.44 +0.4
30,956 - GFF6453 0.44 -1.7
30,956 - GFF6453 0.44 -1.9
31,066 + GFF6453 0.50 -1.5
31,066 + GFF6453 0.50 -1.4
31,066 + GFF6453 0.50 -0.3
31,066 + GFF6453 0.50 +1.0
31,066 + GFF6453 0.50 -0.1
31,066 + GFF6453 0.50 -1.4
31,066 + GFF6453 0.50 -1.4
31,066 + GFF6453 0.50 +0.1
31,067 - GFF6453 0.50 +0.8
31,067 - GFF6453 0.50 +0.4
31,067 - GFF6453 0.50 -0.0
31,067 - GFF6453 0.50 -0.3
31,067 - GFF6453 0.50 -0.4
31,067 - GFF6453 0.50 -0.4
31,067 - GFF6453 0.50 -0.1
31,067 - GFF6453 0.50 -0.6

Or see this region's nucleotide sequence