Strain Fitness in Variovorax sp. SCN45 around GFF6447

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6446 and GFF6447 are separated by 67 nucleotidesGFF6447 and GFF6448 are separated by 195 nucleotides GFF6446 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 22,295 to 23,368 GFF6446 GFF6447 - no description, at 23,436 to 24,272 GFF6447 GFF6448 - Glucans biosynthesis protein D precursor, at 24,468 to 26,066 GFF6448 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.748 kb on + strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.749 kb on - strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.841 kb on + strand, within GFF6446at 22.842 kb on - strand, within GFF6446at 22.943 kb on + strand, within GFF6446at 22.944 kb on - strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.036 kb on + strand, within GFF6446at 23.037 kb on - strand, within GFF6446at 23.273 kb on + strandat 23.273 kb on + strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.274 kb on - strandat 23.288 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.336 kb on + strandat 23.337 kb on - strandat 23.337 kb on - strandat 23.553 kb on + strand, within GFF6447at 23.553 kb on + strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.554 kb on - strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.622 kb on + strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.623 kb on - strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.727 kb on + strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.728 kb on - strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.940 kb on + strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 23.941 kb on - strand, within GFF6447at 24.156 kb on + strand, within GFF6447at 24.157 kb on - strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.186 kb on + strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.187 kb on - strand, within GFF6447at 24.234 kb on + strandat 24.234 kb on + strandat 24.234 kb on + strandat 24.235 kb on - strandat 24.235 kb on - strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.243 kb on + strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.244 kb on - strandat 24.270 kb on + strandat 24.271 kb on - strandat 24.286 kb on + strandat 24.290 kb on + strandat 24.290 kb on + strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.291 kb on - strandat 24.636 kb on + strand, within GFF6448at 24.636 kb on + strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.637 kb on - strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.852 kb on + strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.853 kb on - strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.864 kb on + strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 24.865 kb on - strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.011 kb on + strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.012 kb on - strand, within GFF6448at 25.035 kb on + strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.036 kb on - strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.041 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.122 kb on + strand, within GFF6448at 25.123 kb on - strand, within GFF6448at 25.123 kb on - strand, within GFF6448

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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22,748 + GFF6446 0.42 -1.6
22,748 + GFF6446 0.42 -0.3
22,748 + GFF6446 0.42 -0.2
22,749 - GFF6446 0.42 -0.7
22,749 - GFF6446 0.42 +0.1
22,749 - GFF6446 0.42 +0.0
22,749 - GFF6446 0.42 -0.4
22,841 + GFF6446 0.51 -0.7
22,841 + GFF6446 0.51 +0.1
22,841 + GFF6446 0.51 +0.4
22,841 + GFF6446 0.51 -1.1
22,841 + GFF6446 0.51 +1.7
22,842 - GFF6446 0.51 -0.1
22,943 + GFF6446 0.60 +0.0
22,944 - GFF6446 0.60 -0.5
23,036 + GFF6446 0.69 -0.0
23,036 + GFF6446 0.69 -1.1
23,037 - GFF6446 0.69 +2.1
23,273 + -0.5
23,273 + +0.1
23,274 - -0.1
23,274 - +0.4
23,274 - -1.4
23,288 + +0.3
23,336 + -0.4
23,336 + -1.0
23,336 + -0.8
23,337 - +0.9
23,337 - +0.7
23,553 + GFF6447 0.14 +0.3
23,553 + GFF6447 0.14 -0.3
23,554 - GFF6447 0.14 -0.7
23,554 - GFF6447 0.14 +1.3
23,554 - GFF6447 0.14 -0.1
23,554 - GFF6447 0.14 -2.7
23,622 + GFF6447 0.22 -0.6
23,622 + GFF6447 0.22 -1.2
23,622 + GFF6447 0.22 -0.9
23,623 - GFF6447 0.22 -0.1
23,623 - GFF6447 0.22 -1.3
23,727 + GFF6447 0.35 -0.9
23,727 + GFF6447 0.35 +0.4
23,728 - GFF6447 0.35 +1.4
23,728 - GFF6447 0.35 -0.5
23,940 + GFF6447 0.60 -0.1
23,940 + GFF6447 0.60 -0.9
23,940 + GFF6447 0.60 +1.1
23,941 - GFF6447 0.60 +0.6
23,941 - GFF6447 0.60 +0.6
23,941 - GFF6447 0.60 +2.4
23,941 - GFF6447 0.60 +1.4
23,941 - GFF6447 0.60 -0.9
23,941 - GFF6447 0.60 +0.3
23,941 - GFF6447 0.60 -1.7
24,156 + GFF6447 0.86 -0.2
24,157 - GFF6447 0.86 +0.3
24,186 + GFF6447 0.90 -0.1
24,186 + GFF6447 0.90 -0.3
24,186 + GFF6447 0.90 +0.7
24,186 + GFF6447 0.90 +0.7
24,186 + GFF6447 0.90 -0.3
24,186 + GFF6447 0.90 -2.0
24,186 + GFF6447 0.90 -0.3
24,186 + GFF6447 0.90 +0.0
24,186 + GFF6447 0.90 +0.6
24,187 - GFF6447 0.90 -0.9
24,187 - GFF6447 0.90 -0.4
24,187 - GFF6447 0.90 -0.6
24,187 - GFF6447 0.90 -0.3
24,187 - GFF6447 0.90 -0.2
24,187 - GFF6447 0.90 +0.3
24,234 + -0.9
24,234 + +0.0
24,234 + +0.6
24,235 - -1.1
24,235 - -0.9
24,243 + -1.5
24,243 + -0.4
24,243 + -0.4
24,243 + +0.3
24,243 + -0.4
24,243 + -0.8
24,243 + +0.9
24,243 + -0.2
24,243 + +1.4
24,243 + +0.0
24,243 + +0.4
24,243 + +0.1
24,244 - -0.6
24,244 - -0.1
24,244 - -0.4
24,244 - -0.1
24,244 - -0.6
24,244 - -0.6
24,244 - +1.4
24,270 + -1.4
24,271 - +0.4
24,286 + +0.9
24,290 + -0.1
24,290 + -0.1
24,291 - +1.9
24,291 - -0.9
24,291 - +0.2
24,291 - +2.4
24,636 + GFF6448 0.11 -0.4
24,636 + GFF6448 0.11 +0.1
24,637 - GFF6448 0.11 -0.3
24,637 - GFF6448 0.11 -0.2
24,637 - GFF6448 0.11 -0.0
24,637 - GFF6448 0.11 -0.0
24,852 + GFF6448 0.24 +0.1
24,852 + GFF6448 0.24 +1.3
24,852 + GFF6448 0.24 +0.1
24,852 + GFF6448 0.24 -0.0
24,852 + GFF6448 0.24 +0.1
24,853 - GFF6448 0.24 -1.4
24,853 - GFF6448 0.24 +0.1
24,853 - GFF6448 0.24 +0.6
24,864 + GFF6448 0.25 -0.0
24,864 + GFF6448 0.25 -0.1
24,864 + GFF6448 0.25 -0.1
24,865 - GFF6448 0.25 -1.4
24,865 - GFF6448 0.25 +0.3
25,011 + GFF6448 0.34 -1.0
25,011 + GFF6448 0.34 -0.1
25,011 + GFF6448 0.34 +0.3
25,011 + GFF6448 0.34 -0.1
25,012 - GFF6448 0.34 -0.0
25,012 - GFF6448 0.34 -0.3
25,012 - GFF6448 0.34 -0.1
25,012 - GFF6448 0.34 -0.3
25,035 + GFF6448 0.35 -0.1
25,036 - GFF6448 0.36 +0.6
25,036 - GFF6448 0.36 +0.9
25,036 - GFF6448 0.36 +0.3
25,036 - GFF6448 0.36 -0.5
25,041 + GFF6448 0.36 -0.2
25,041 + GFF6448 0.36 -0.1
25,122 + GFF6448 0.41 -0.1
25,122 + GFF6448 0.41 +0.1
25,122 + GFF6448 0.41 -0.5
25,123 - GFF6448 0.41 +0.9
25,123 - GFF6448 0.41 +0.1

Or see this region's nucleotide sequence