Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6433 and GFF6434 are separated by 71 nucleotides GFF6434 and GFF6435 are separated by 76 nucleotides GFF6435 and GFF6436 are separated by 34 nucleotides
GFF6433 - hypothetical protein, at 6,133 to 11,397
GFF6433
GFF6434 - Inner membrane protein YqiK, at 11,469 to 13,655
GFF6434
GFF6435 - no description, at 13,732 to 14,385
GFF6435
GFF6436 - hypothetical protein, at 14,420 to 14,794
GFF6436
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 10.478 kb on + strand, within GFF6433 at 10.595 kb on + strand, within GFF6433 at 10.595 kb on + strand, within GFF6433 at 10.596 kb on - strand, within GFF6433 at 10.596 kb on - strand, within GFF6433 at 10.596 kb on - strand, within GFF6433 at 10.596 kb on - strand, within GFF6433 at 10.627 kb on + strand, within GFF6433 at 10.788 kb on + strand, within GFF6433 at 10.789 kb on - strand, within GFF6433 at 10.790 kb on + strand, within GFF6433 at 10.791 kb on - strand, within GFF6433 at 10.791 kb on - strand, within GFF6433 at 10.791 kb on - strand, within GFF6433 at 10.920 kb on - strand at 10.922 kb on + strand at 10.923 kb on - strand at 10.923 kb on - strand at 10.923 kb on - strand at 10.928 kb on + strand at 10.928 kb on + strand at 10.928 kb on + strand at 10.928 kb on + strand at 10.928 kb on + strand at 10.929 kb on - strand at 10.929 kb on - strand at 10.929 kb on - strand at 10.929 kb on - strand at 10.929 kb on - strand at 10.929 kb on - strand at 11.100 kb on - strand at 11.100 kb on - strand at 11.100 kb on - strand at 11.179 kb on + strand at 11.179 kb on + strand at 11.397 kb on + strand at 11.397 kb on + strand at 11.397 kb on + strand at 11.397 kb on + strand at 11.397 kb on + strand at 11.398 kb on - strand at 11.561 kb on + strand at 13.150 kb on + strand, within GFF6434 at 13.150 kb on + strand, within GFF6434 at 13.150 kb on + strand, within GFF6434 at 13.151 kb on - strand, within GFF6434 at 13.213 kb on + strand, within GFF6434 at 13.213 kb on + strand, within GFF6434 at 13.495 kb on + strand at 13.495 kb on + strand at 13.496 kb on - strand at 13.766 kb on + strand at 13.787 kb on + strand at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.310 kb on - strand, within GFF6435 at 14.339 kb on + strand at 14.421 kb on + strand at 14.421 kb on + strand at 14.421 kb on + strand at 14.422 kb on - strand at 14.422 kb on - strand at 14.577 kb on + strand, within GFF6436
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 10,478 + GFF6433 0.83 -0.3 10,595 + GFF6433 0.85 -0.9 10,595 + GFF6433 0.85 +0.4 10,596 - GFF6433 0.85 +0.0 10,596 - GFF6433 0.85 -2.2 10,596 - GFF6433 0.85 -0.1 10,596 - GFF6433 0.85 +0.4 10,627 + GFF6433 0.85 -0.4 10,788 + GFF6433 0.88 -0.1 10,789 - GFF6433 0.88 -0.0 10,790 + GFF6433 0.88 +0.7 10,791 - GFF6433 0.88 -0.6 10,791 - GFF6433 0.88 -0.2 10,791 - GFF6433 0.88 -1.3 10,920 - -0.6 10,922 + -0.1 10,923 - -0.3 10,923 - -1.9 10,923 - -0.4 10,928 + +0.6 10,928 + -0.7 10,928 + -0.1 10,928 + -0.7 10,928 + -0.5 10,929 - +1.0 10,929 - -1.4 10,929 - -0.3 10,929 - +0.1 10,929 - -0.2 10,929 - +1.0 11,100 - +0.0 11,100 - -0.5 11,100 - -2.6 11,179 + +0.7 11,179 + +0.3 11,397 + +1.1 11,397 + -0.9 11,397 + -0.6 11,397 + -1.0 11,397 + -2.4 11,398 - -1.5 11,561 + +0.4 13,150 + GFF6434 0.77 -1.6 13,150 + GFF6434 0.77 +2.2 13,150 + GFF6434 0.77 -1.1 13,151 - GFF6434 0.77 -0.3 13,213 + GFF6434 0.80 -1.5 13,213 + GFF6434 0.80 -3.5 13,495 + -1.8 13,495 + -0.1 13,496 - -0.1 13,766 + -0.0 13,787 + +0.8 14,192 + GFF6435 0.70 -0.2 14,192 + GFF6435 0.70 +0.4 14,192 + GFF6435 0.70 -0.4 14,192 + GFF6435 0.70 -0.3 14,192 + GFF6435 0.70 +0.6 14,192 + GFF6435 0.70 -2.4 14,192 + GFF6435 0.70 +0.1 14,193 - GFF6435 0.70 -0.6 14,193 - GFF6435 0.70 -1.5 14,193 - GFF6435 0.70 +0.1 14,193 - GFF6435 0.70 +1.4 14,193 - GFF6435 0.70 -0.3 14,310 - GFF6435 0.88 -0.5 14,339 + +0.0 14,421 + +2.4 14,421 + +0.1 14,421 + -0.1 14,422 - +0.4 14,422 - -0.2 14,577 + GFF6436 0.42 -2.0
Or see this region's nucleotide sequence