Strain Fitness in Variovorax sp. SCN45 around GFF6428

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
1,065	+				-0.1
1,065	+				+0.4
1,065	+				-3.1
1,065	+				-0.2
1,065	+				+0.2
1,065	+				-0.5
1,066	-				-0.5
1,066	-				-2.3
1,209	+		GFF6427	0.24	-0.3
1,237	+		GFF6427	0.27	+0.2
1,237	+		GFF6427	0.27	-0.3
1,237	+		GFF6427	0.27	+0.2
1,237	+		GFF6427	0.27	-0.1
1,238	-		GFF6427	0.27	+2.3
1,238	-		GFF6427	0.27	-1.1
1,238	-		GFF6427	0.27	+0.1
1,277	-		GFF6427	0.31	-0.6
1,278	+		GFF6427	0.31	-1.9
1,278	+		GFF6427	0.31	+0.3
1,279	-		GFF6427	0.32	+3.0
1,279	-		GFF6427	0.32	+0.2
1,395	+		GFF6427	0.44	-0.7
1,395	+		GFF6427	0.44	-0.5
1,395	+		GFF6427	0.44	+0.2
1,396	-		GFF6427	0.44	+0.3
1,482	+		GFF6427	0.53	-0.6
1,482	+		GFF6427	0.53	-0.1
1,482	+		GFF6427	0.53	-0.7
1,483	-		GFF6427	0.53	-0.1
1,483	-		GFF6427	0.53	-1.4
1,483	-		GFF6427	0.53	-0.4
1,483	-		GFF6427	0.53	-1.5
1,659	+		GFF6427	0.71	-0.3
1,668	+		GFF6427	0.72	-0.6
1,669	-		GFF6427	0.72	-1.6
1,686	+		GFF6427	0.74	-0.6
1,687	-		GFF6427	0.74	-0.9
2,041	-		GFF6428	0.14	-1.1
2,041	-		GFF6428	0.14	+0.1
2,304	+		GFF6428	0.83	-0.6
2,304	+		GFF6428	0.83	+0.2
2,304	+		GFF6428	0.83	+0.4
2,304	+		GFF6428	0.83	+1.9
2,342	+				-1.1
2,342	+				+0.4
2,343	-				-0.2
2,372	+				-0.5
2,372	+				+1.4
2,793	-		GFF6429	0.43	-0.1
3,113	+		GFF6429	0.76	-0.3
3,218	+		GFF6429	0.87	-0.6