Strain Fitness in Variovorax sp. SCN45 around GFF6417

Experiment: Community=Kojac gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6415 and GFF6416 are separated by 37 nucleotidesGFF6416 and GFF6417 are separated by 16 nucleotidesGFF6417 and GFF6418 overlap by 4 nucleotidesGFF6418 and GFF6419 are separated by 127 nucleotides GFF6415 - ATP-dependent DNA helicase RecQ, at 89,037 to 90,812 GFF6415 GFF6416 - hypothetical protein, at 90,850 to 91,716 GFF6416 GFF6417 - BUG/TctC family periplasmic protein, at 91,733 to 92,725 GFF6417 GFF6418 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 92,722 to 93,561 GFF6418 GFF6419 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 93,689 to 94,870 GFF6419 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 90.774 kb on + strandat 90.775 kb on - strandat 91.054 kb on + strand, within GFF6416at 91.054 kb on + strand, within GFF6416at 91.055 kb on - strand, within GFF6416at 91.055 kb on - strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.603 kb on + strand, within GFF6416at 91.604 kb on - strand, within GFF6416at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.968 kb on + strand, within GFF6417at 91.969 kb on - strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.439 kb on + strand, within GFF6417at 92.439 kb on + strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.590 kb on - strand, within GFF6417at 92.590 kb on - strand, within GFF6417at 92.840 kb on + strand, within GFF6418at 92.840 kb on + strand, within GFF6418at 92.840 kb on + strand, within GFF6418at 92.840 kb on + strand, within GFF6418at 92.841 kb on - strand, within GFF6418at 92.841 kb on - strand, within GFF6418at 92.841 kb on - strand, within GFF6418at 92.841 kb on - strand, within GFF6418at 92.986 kb on + strand, within GFF6418at 92.987 kb on - strand, within GFF6418at 92.987 kb on - strand, within GFF6418at 92.987 kb on - strand, within GFF6418at 93.446 kb on + strand, within GFF6418at 93.447 kb on - strand, within GFF6418at 93.447 kb on - strand, within GFF6418at 93.467 kb on + strand, within GFF6418at 93.468 kb on - strand, within GFF6418at 93.468 kb on - strand, within GFF6418at 93.468 kb on - strand, within GFF6418at 93.468 kb on - strand, within GFF6418at 93.580 kb on - strandat 93.618 kb on - strandat 93.618 kb on - strandat 93.680 kb on + strandat 93.680 kb on + strandat 93.680 kb on + strandat 93.681 kb on - strandat 93.681 kb on - strandat 93.681 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
remove
90,774 + +1.0
90,775 - +0.2
91,054 + GFF6416 0.24 -0.4
91,054 + GFF6416 0.24 +0.8
91,055 - GFF6416 0.24 -0.3
91,055 - GFF6416 0.24 +1.4
91,141 + GFF6416 0.34 -0.2
91,141 + GFF6416 0.34 +0.5
91,141 + GFF6416 0.34 -0.9
91,141 + GFF6416 0.34 +1.0
91,141 + GFF6416 0.34 -1.8
91,142 - GFF6416 0.34 +0.2
91,142 - GFF6416 0.34 -0.0
91,142 - GFF6416 0.34 -0.0
91,142 - GFF6416 0.34 -0.5
91,142 - GFF6416 0.34 -0.2
91,142 - GFF6416 0.34 -0.3
91,603 + GFF6416 0.87 -0.4
91,604 - GFF6416 0.87 +0.8
91,959 + GFF6417 0.23 -1.0
91,959 + GFF6417 0.23 -0.0
91,959 + GFF6417 0.23 -0.6
91,959 + GFF6417 0.23 -0.3
91,959 + GFF6417 0.23 -1.1
91,959 + GFF6417 0.23 -0.8
91,959 + GFF6417 0.23 -0.2
91,959 + GFF6417 0.23 +0.1
91,959 + GFF6417 0.23 -0.3
91,960 - GFF6417 0.23 -0.2
91,960 - GFF6417 0.23 +0.2
91,960 - GFF6417 0.23 +2.6
91,968 + GFF6417 0.24 -0.7
91,969 - GFF6417 0.24 +0.0
92,154 + GFF6417 0.42 +1.1
92,154 + GFF6417 0.42 -0.6
92,154 + GFF6417 0.42 +0.6
92,154 + GFF6417 0.42 +0.8
92,154 + GFF6417 0.42 +0.8
92,155 - GFF6417 0.42 +1.2
92,155 - GFF6417 0.42 -0.1
92,155 - GFF6417 0.42 +0.2
92,155 - GFF6417 0.42 +0.1
92,155 - GFF6417 0.42 -0.3
92,155 - GFF6417 0.42 -0.5
92,155 - GFF6417 0.42 +1.3
92,155 - GFF6417 0.42 -0.1
92,155 - GFF6417 0.42 +0.1
92,155 - GFF6417 0.42 -1.4
92,155 - GFF6417 0.42 +1.3
92,155 - GFF6417 0.42 +0.3
92,155 - GFF6417 0.42 +0.0
92,241 + GFF6417 0.51 -0.2
92,241 + GFF6417 0.51 -0.2
92,241 + GFF6417 0.51 +0.8
92,241 + GFF6417 0.51 +0.0
92,241 + GFF6417 0.51 +0.6
92,241 + GFF6417 0.51 -0.9
92,241 + GFF6417 0.51 -0.8
92,241 + GFF6417 0.51 -0.3
92,241 + GFF6417 0.51 -0.2
92,241 + GFF6417 0.51 -0.4
92,241 + GFF6417 0.51 -0.9
92,242 - GFF6417 0.51 -2.0
92,242 - GFF6417 0.51 +1.8
92,242 - GFF6417 0.51 +0.3
92,242 - GFF6417 0.51 -0.2
92,242 - GFF6417 0.51 +0.2
92,242 - GFF6417 0.51 +0.8
92,242 - GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 -0.4
92,242 - GFF6417 0.51 +0.8
92,242 - GFF6417 0.51 +0.4
92,242 - GFF6417 0.51 +0.2
92,242 - GFF6417 0.51 +0.8
92,242 - GFF6417 0.51 -0.5
92,242 - GFF6417 0.51 -1.3
92,242 - GFF6417 0.51 +0.1
92,242 - GFF6417 0.51 -0.6
92,242 - GFF6417 0.51 -0.4
92,242 - GFF6417 0.51 -0.5
92,439 + GFF6417 0.71 -0.3
92,439 + GFF6417 0.71 -1.3
92,440 - GFF6417 0.71 -1.0
92,440 - GFF6417 0.71 -1.0
92,440 - GFF6417 0.71 -0.5
92,440 - GFF6417 0.71 +0.5
92,590 - GFF6417 0.86 -0.5
92,590 - GFF6417 0.86 +0.1
92,840 + GFF6418 0.14 -0.6
92,840 + GFF6418 0.14 +0.0
92,840 + GFF6418 0.14 +0.1
92,840 + GFF6418 0.14 -0.2
92,841 - GFF6418 0.14 -1.1
92,841 - GFF6418 0.14 -0.9
92,841 - GFF6418 0.14 +0.5
92,841 - GFF6418 0.14 +0.4
92,986 + GFF6418 0.31 +0.6
92,987 - GFF6418 0.32 -0.5
92,987 - GFF6418 0.32 +0.8
92,987 - GFF6418 0.32 -0.2
93,446 + GFF6418 0.86 -0.3
93,447 - GFF6418 0.86 -0.9
93,447 - GFF6418 0.86 +0.8
93,467 + GFF6418 0.89 -0.6
93,468 - GFF6418 0.89 +0.0
93,468 - GFF6418 0.89 -0.6
93,468 - GFF6418 0.89 +0.1
93,468 - GFF6418 0.89 -0.3
93,580 - -0.5
93,618 - +0.1
93,618 - -0.5
93,680 + -1.0
93,680 + -0.1
93,680 + -1.4
93,681 - +0.6
93,681 - -1.3
93,681 - -0.3

Or see this region's nucleotide sequence