Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6366 and GFF6367 overlap by 4 nucleotides GFF6367 and GFF6368 are separated by 0 nucleotides GFF6368 and GFF6369 overlap by 4 nucleotides
GFF6366 - T6SS component TssG (ImpH/VasB), at 35,106 to 36,281
GFF6366
GFF6367 - T6SS component TssF (ImpG/VasA), at 36,278 to 38,149
GFF6367
GFF6368 - T6SS lysozyme-like component TssE, at 38,150 to 38,698
GFF6368
GFF6369 - T6SS associated component TagJ (ImpE), at 38,695 to 39,558
GFF6369
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -1
0
1
2 at 35.315 kb on - strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.704 kb on + strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.774 kb on - strand, within GFF6366 at 36.194 kb on - strand at 36.194 kb on - strand at 36.417 kb on + strand at 36.586 kb on - strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.742 kb on + strand, within GFF6367 at 36.743 kb on - strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.985 kb on - strand, within GFF6367 at 37.363 kb on - strand, within GFF6367 at 37.363 kb on - strand, within GFF6367 at 38.104 kb on + strand at 38.105 kb on - strand at 38.106 kb on + strand at 38.106 kb on + strand at 38.127 kb on + strand at 38.434 kb on - strand, within GFF6368 at 38.795 kb on + strand, within GFF6369
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 35,315 - GFF6366 0.18 +1.8 35,580 + GFF6366 0.40 -0.4 35,580 + GFF6366 0.40 -0.9 35,581 - GFF6366 0.40 -0.4 35,581 - GFF6366 0.40 -1.0 35,704 + GFF6366 0.51 +0.7 35,705 - GFF6366 0.51 +1.2 35,705 - GFF6366 0.51 +0.8 35,705 - GFF6366 0.51 +0.6 35,774 - GFF6366 0.57 +1.8 36,194 - +0.5 36,194 - +0.0 36,417 + -0.3 36,586 - GFF6367 0.16 +0.4 36,651 + GFF6367 0.20 -1.2 36,651 + GFF6367 0.20 -1.1 36,742 + GFF6367 0.25 -0.6 36,743 - GFF6367 0.25 -0.7 36,897 + GFF6367 0.33 -0.4 36,897 + GFF6367 0.33 -0.8 36,897 + GFF6367 0.33 +0.1 36,897 + GFF6367 0.33 +0.8 36,916 - GFF6367 0.34 -0.5 36,916 - GFF6367 0.34 -1.1 36,985 - GFF6367 0.38 +0.1 37,363 - GFF6367 0.58 -0.8 37,363 - GFF6367 0.58 +0.7 38,104 + -0.2 38,105 - -0.5 38,106 + -1.0 38,106 + -1.0 38,127 + -0.4 38,434 - GFF6368 0.52 +0.3 38,795 + GFF6369 0.12 +1.8
Or see this region's nucleotide sequence