Strain Fitness in Variovorax sp. SCN45 around GFF6288

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
76,248	+		GFF6286	0.20	+0.8
76,248	+		GFF6286	0.20	-0.8
76,248	+		GFF6286	0.20	+0.5
76,248	+		GFF6286	0.20	-0.6
76,248	+		GFF6286	0.20	-0.4
76,248	+		GFF6286	0.20	-0.3
76,248	+		GFF6286	0.20	-0.6
76,248	+		GFF6286	0.20	-0.4
76,248	+		GFF6286	0.20	+0.7
76,248	+		GFF6286	0.20	-0.0
76,248	+		GFF6286	0.20	-1.1
76,248	+		GFF6286	0.20	+0.8
76,248	+		GFF6286	0.20	+0.1
76,248	+		GFF6286	0.20	+0.5
76,248	+		GFF6286	0.20	+0.5
76,248	+		GFF6286	0.20	-0.3
76,248	+		GFF6286	0.20	+0.2
76,248	+		GFF6286	0.20	-0.1
76,248	+		GFF6286	0.20	-0.5
76,248	+		GFF6286	0.20	-0.4
76,248	+		GFF6286	0.20	-2.7
76,248	+		GFF6286	0.20	+0.3
76,249	-		GFF6286	0.20	-0.8
76,249	-		GFF6286	0.20	-1.5
76,249	-		GFF6286	0.20	+0.0
76,249	-		GFF6286	0.20	+0.2
76,249	-		GFF6286	0.20	+0.8
76,249	-		GFF6286	0.20	-0.3
76,249	-		GFF6286	0.20	+1.2
76,249	-		GFF6286	0.20	+0.6
76,249	-		GFF6286	0.20	+2.3
76,249	-		GFF6286	0.20	-1.0
76,249	-		GFF6286	0.20	-0.5
76,249	-		GFF6286	0.20	+0.9
76,249	-		GFF6286	0.20	-0.4
76,249	-		GFF6286	0.20	+0.8
76,249	-		GFF6286	0.20	-1.0
76,249	-		GFF6286	0.20	-0.4
76,249	-		GFF6286	0.20	-0.3
76,281	+		GFF6286	0.25	-0.0
76,281	+		GFF6286	0.25	-0.7
76,281	+		GFF6286	0.25	-0.5
76,281	+		GFF6286	0.25	-0.3
76,281	+		GFF6286	0.25	+0.8
76,281	+		GFF6286	0.25	-0.3
76,281	+		GFF6286	0.25	-0.4
76,281	+		GFF6286	0.25	-0.3
76,281	+		GFF6286	0.25	-0.4
76,281	+		GFF6286	0.25	-0.4
76,281	+		GFF6286	0.25	+1.2
76,281	+		GFF6286	0.25	-0.5
76,281	+		GFF6286	0.25	-0.5
76,281	+		GFF6286	0.25	-0.6
76,281	+		GFF6286	0.25	-1.0
76,281	+		GFF6286	0.25	+0.5
76,281	+		GFF6286	0.25	+0.6
76,282	-		GFF6286	0.26	+0.2
76,282	-		GFF6286	0.26	-0.4
76,282	-		GFF6286	0.26	-0.1
76,282	-		GFF6286	0.26	-0.1
76,282	-		GFF6286	0.26	-0.1
76,282	-		GFF6286	0.26	-1.3
76,282	-		GFF6286	0.26	+0.3
76,282	-		GFF6286	0.26	-1.5
76,282	-		GFF6286	0.26	-1.3
76,282	-		GFF6286	0.26	-1.1
76,282	-		GFF6286	0.26	-0.4
76,282	-		GFF6286	0.26	-1.8
76,282	-		GFF6286	0.26	-0.4
76,282	-		GFF6286	0.26	-0.5
76,282	-		GFF6286	0.26	-0.8
76,282	-		GFF6286	0.26	+0.4
76,282	-		GFF6286	0.26	+0.2
76,282	-		GFF6286	0.26	-0.8
76,282	-		GFF6286	0.26	+2.0
76,296	+		GFF6286	0.28	-0.7
76,296	+		GFF6286	0.28	-0.1
76,504	-		GFF6286	0.61	+0.6
76,599	+		GFF6286	0.75	+0.1
76,599	+		GFF6286	0.75	+0.2
76,599	+		GFF6286	0.75	-1.4
76,599	+		GFF6286	0.75	+0.1
76,599	+		GFF6286	0.75	-0.7
76,599	+		GFF6286	0.75	+0.8
76,599	+		GFF6286	0.75	+0.1
76,599	+		GFF6286	0.75	-0.8
76,600	-		GFF6286	0.76	-0.2
76,600	-		GFF6286	0.76	+0.4
76,600	-		GFF6286	0.76	-0.3
76,600	-		GFF6286	0.76	+0.1
76,600	-		GFF6286	0.76	-1.0
76,600	-		GFF6286	0.76	-1.0
76,600	-		GFF6286	0.76	-0.2
76,600	-		GFF6286	0.76	-2.9
76,600	-		GFF6286	0.76	-0.1
76,600	-		GFF6286	0.76	-1.3
76,600	-		GFF6286	0.76	+0.6
76,676	+		GFF6286	0.88	-1.0
76,676	+		GFF6286	0.88	-1.0
76,676	+		GFF6286	0.88	-0.4
76,676	+		GFF6286	0.88	-1.5
76,676	+		GFF6286	0.88	-0.2
76,676	+		GFF6286	0.88	-0.1
76,676	+		GFF6286	0.88	-1.3
76,676	+		GFF6286	0.88	-0.3
76,676	+		GFF6286	0.88	+0.6
76,677	-		GFF6286	0.88	+0.3
76,677	-		GFF6286	0.88	-0.5
76,677	-		GFF6286	0.88	-0.4
76,677	-		GFF6286	0.88	-1.1
76,677	-		GFF6286	0.88	-0.3
76,677	-		GFF6286	0.88	-2.2
76,677	-		GFF6286	0.88	+0.4
76,677	-		GFF6286	0.88	-0.2
76,677	-		GFF6286	0.88	-0.2
76,677	-		GFF6286	0.88	-1.4
76,677	-		GFF6286	0.88	-0.5
76,677	-		GFF6286	0.88	-0.7
76,677	-		GFF6286	0.88	-1.9
76,677	-		GFF6286	0.88	-0.6
76,707	+				-1.0
76,752	+				-1.1
76,753	-				-0.2
76,789	+				-0.9
76,789	+				-0.6
76,789	+				-0.8
76,789	+				-0.2
76,789	+				-0.1
76,789	+				-1.6
76,790	-				+0.8
76,790	-				-0.3
76,841	+		GFF6287	0.20	-2.0
76,842	-		GFF6287	0.21	-1.4
76,842	-		GFF6287	0.21	+1.2
76,905	+		GFF6287	0.45	-0.5
76,905	+		GFF6287	0.45	+0.0
76,905	+		GFF6287	0.45	-0.9
76,905	+		GFF6287	0.45	-0.1
76,905	+		GFF6287	0.45	-0.4
76,905	+		GFF6287	0.45	+0.8
76,905	+		GFF6287	0.45	-1.2
76,905	+		GFF6287	0.45	-0.5
76,906	-		GFF6287	0.45	-0.2
76,906	-		GFF6287	0.45	-0.2
76,906	-		GFF6287	0.45	-0.5
76,906	-		GFF6287	0.45	+0.0
76,906	-		GFF6287	0.45	-1.1
76,906	-		GFF6287	0.45	-1.2
76,906	-		GFF6287	0.45	-1.5
76,906	-		GFF6287	0.45	+0.7
76,906	-		GFF6287	0.45	-0.7
76,906	-		GFF6287	0.45	-1.0
76,906	-		GFF6287	0.45	-0.2
76,906	-		GFF6287	0.45	+0.5
76,984	+		GFF6287	0.75	-0.3
76,984	+		GFF6287	0.75	-0.0
76,984	+		GFF6287	0.75	-0.2
76,985	-		GFF6287	0.75	-0.8
76,985	-		GFF6287	0.75	-0.7
76,985	-		GFF6287	0.75	-0.5
76,985	-		GFF6287	0.75	+0.5
76,985	-		GFF6287	0.75	-0.8
76,990	+		GFF6287	0.77	-0.8
77,035	+				+0.5
77,035	+				+0.2
77,035	+				+0.2
77,035	+				-0.8
77,036	-				-1.5
77,036	-				-1.3
77,082	+				-0.4
77,083	-				+1.0
77,094	+				-1.5
77,103	+				+0.5
77,103	+				-0.4
77,103	+				-0.9
77,104	-				+1.2
77,104	-				-0.3
77,106	+				-0.9
77,106	+				-0.8
77,106	+				-1.2
77,106	+				+0.8
77,106	+				-0.4
77,106	+				+0.2
77,106	+				-0.4
77,106	+				-1.6
77,106	+				-0.5
77,106	+				+0.1
77,106	+				-0.1
77,106	+				-1.2
77,106	+				+0.4
77,106	+				-0.3
77,106	+				-0.9
77,107	-				+0.8
77,107	-				-0.5
77,107	-				-2.0
77,107	-				-0.8
77,107	-				-0.5
77,107	-				+1.0
77,107	-				+0.5
77,107	-				-0.2
77,107	-				+0.2
77,107	-				-0.1
77,107	-				+1.5
77,107	-				-0.7
77,107	-				-0.6
77,110	+				-0.2
77,110	+				-0.7
77,110	+				+0.1
77,110	+				-1.2
77,110	+				-1.2
77,110	+				-0.6
77,110	+				+0.0
77,110	+				-0.7
77,110	+				+0.8
77,110	+				-0.4
77,110	+				-0.1
77,111	-				-0.9
77,111	-				+0.1
77,111	-				+0.0
77,111	-				+0.4
77,111	-				-0.4
77,111	-				+1.3
77,111	-				-1.1
77,111	-				-1.1
77,111	-				-0.5
77,111	-				+1.1
77,111	-				+0.2
77,111	-				-0.3
77,111	-				-1.7
77,111	-				-1.0
77,111	-				+0.5
77,112	+				+0.2
77,112	+				-0.4
77,112	+				-1.5
77,112	+				-0.5
77,112	+				-0.6
77,112	+				-0.7
77,112	+				-0.8
77,112	+				-0.9
77,112	+				-0.5
77,112	+				-1.8
77,113	-				-0.2
77,113	-				-0.6
77,113	-				-0.5
77,113	-				-0.9
77,113	-				+0.7
77,113	-				+0.0
77,113	-				-1.7
77,113	-				-0.2
77,113	-				+0.2
77,113	-				+0.3
77,113	-				-0.5
77,113	-				-0.3
77,113	-				-0.7
77,113	-				-0.5
77,113	-				-0.4
77,113	-				-0.4
77,113	-				-0.2
77,113	-				-0.4
77,114	-				-0.8
77,117	+				-1.0
77,117	+				-0.2
77,118	-				-0.3
77,118	-				-0.4
77,118	-				-0.7
77,155	+				+0.3
77,155	+				-0.2
77,156	-				-0.3
77,156	-				-0.4
77,407	+		GFF6288	0.33	-0.7
77,407	+		GFF6288	0.33	-0.9
77,407	+		GFF6288	0.33	-0.6
77,407	+		GFF6288	0.33	+0.4
77,407	+		GFF6288	0.33	-0.2
77,407	+		GFF6288	0.33	-0.5
77,407	+		GFF6288	0.33	+0.6
77,407	+		GFF6288	0.33	+0.9
77,407	+		GFF6288	0.33	-0.7
77,407	+		GFF6288	0.33	-0.1
77,408	-		GFF6288	0.33	-0.2
77,408	-		GFF6288	0.33	-0.0
77,408	-		GFF6288	0.33	-0.6
77,408	-		GFF6288	0.33	+0.2
77,408	-		GFF6288	0.33	+0.8
77,408	-		GFF6288	0.33	-0.4
77,408	-		GFF6288	0.33	+0.0
77,408	-		GFF6288	0.33	-0.2
77,408	-		GFF6288	0.33	+0.2
77,408	-		GFF6288	0.33	-0.2
77,408	-		GFF6288	0.33	-1.2
77,437	+		GFF6288	0.38	-1.4
77,437	+		GFF6288	0.38	-0.3
77,437	+		GFF6288	0.38	-2.3
77,437	+		GFF6288	0.38	+0.5
77,437	+		GFF6288	0.38	+0.6
77,438	-		GFF6288	0.38	+0.4
77,438	-		GFF6288	0.38	+1.4
77,438	-		GFF6288	0.38	-0.4
77,438	-		GFF6288	0.38	-0.8
77,446	+		GFF6288	0.39	-1.3
77,446	+		GFF6288	0.39	+2.8
77,446	+		GFF6288	0.39	-1.1
77,446	+		GFF6288	0.39	-1.4
77,446	+		GFF6288	0.39	-0.8
77,446	+		GFF6288	0.39	-1.3
77,446	+		GFF6288	0.39	-0.7
77,446	+		GFF6288	0.39	+0.3
77,446	+		GFF6288	0.39	+1.0
77,446	+		GFF6288	0.39	+1.8
77,446	+		GFF6288	0.39	-0.3
77,446	+		GFF6288	0.39	+0.2
77,446	+		GFF6288	0.39	-1.8
77,446	+		GFF6288	0.39	-0.3
77,446	+		GFF6288	0.39	-0.4
77,446	+		GFF6288	0.39	-0.3
77,446	+		GFF6288	0.39	+0.5
77,447	-		GFF6288	0.39	-0.9
77,447	-		GFF6288	0.39	-0.5
77,447	-		GFF6288	0.39	+0.0
77,447	-		GFF6288	0.39	+0.7
77,447	-		GFF6288	0.39	+0.2
77,447	-		GFF6288	0.39	-0.0
77,447	-		GFF6288	0.39	+0.2
77,447	-		GFF6288	0.39	+0.6
77,447	-		GFF6288	0.39	-0.5
77,447	-		GFF6288	0.39	-0.1
77,493	+		GFF6288	0.46	+0.9
77,493	+		GFF6288	0.46	-1.2
77,493	+		GFF6288	0.46	-0.2
77,493	+		GFF6288	0.46	-0.3
77,493	+		GFF6288	0.46	-1.7
77,493	+		GFF6288	0.46	-1.2
77,493	+		GFF6288	0.46	-1.0
77,493	+		GFF6288	0.46	-0.1
77,493	+		GFF6288	0.46	+0.3
77,493	+		GFF6288	0.46	-1.5
77,494	-		GFF6288	0.47	-0.9
77,494	-		GFF6288	0.47	+0.2
77,494	-		GFF6288	0.47	-0.5
77,494	-		GFF6288	0.47	+2.1
77,508	+		GFF6288	0.49	+0.3
77,508	+		GFF6288	0.49	-0.5
77,508	+		GFF6288	0.49	-1.0
77,508	+		GFF6288	0.49	-1.0
77,508	+		GFF6288	0.49	+0.1
77,508	+		GFF6288	0.49	-0.8
77,508	+		GFF6288	0.49	-1.4
77,508	+		GFF6288	0.49	-0.4
77,509	-		GFF6288	0.49	+0.5
77,509	-		GFF6288	0.49	+0.4
77,509	-		GFF6288	0.49	-0.0
77,509	-		GFF6288	0.49	+0.1
77,509	-		GFF6288	0.49	-1.7
77,514	+		GFF6288	0.50	+0.1
77,514	+		GFF6288	0.50	-0.6
77,514	+		GFF6288	0.50	-0.7
77,514	+		GFF6288	0.50	-0.5
77,515	-		GFF6288	0.50	-0.8
77,515	-		GFF6288	0.50	-1.3
77,596	+		GFF6288	0.62	+0.0
77,596	+		GFF6288	0.62	-0.1
77,596	+		GFF6288	0.62	-0.9
77,596	+		GFF6288	0.62	-0.3
77,596	+		GFF6288	0.62	-0.2
77,596	+		GFF6288	0.62	-1.8
77,596	+		GFF6288	0.62	+1.2
77,596	+		GFF6288	0.62	-0.3
77,596	+		GFF6288	0.62	-0.3
77,597	-		GFF6288	0.62	+0.5
77,597	-		GFF6288	0.62	-0.2
77,597	-		GFF6288	0.62	-0.9
77,597	-		GFF6288	0.62	+0.2
77,597	-		GFF6288	0.62	-0.0
77,642	+		GFF6288	0.69	+0.5
77,642	+		GFF6288	0.69	-0.8
77,642	+		GFF6288	0.69	-0.1
77,643	-		GFF6288	0.70	-1.3
77,643	-		GFF6288	0.70	-0.5
77,643	-		GFF6288	0.70	+0.1
77,643	-		GFF6288	0.70	-1.1
77,692	+		GFF6288	0.77	+1.0
77,692	+		GFF6288	0.77	-0.5
77,692	+		GFF6288	0.77	-2.4
77,692	+		GFF6288	0.77	-1.0
77,692	+		GFF6288	0.77	-0.8
77,692	+		GFF6288	0.77	-0.1
77,692	+		GFF6288	0.77	-2.1
77,692	+		GFF6288	0.77	-0.8
77,692	+		GFF6288	0.77	+2.4
77,692	+		GFF6288	0.77	+0.1
77,692	+		GFF6288	0.77	-0.5
77,692	+		GFF6288	0.77	-0.5
77,692	+		GFF6288	0.77	-1.7
77,692	+		GFF6288	0.77	-0.7
77,693	-		GFF6288	0.77	+1.2
77,693	-		GFF6288	0.77	+1.2
77,693	-		GFF6288	0.77	-0.9
77,693	-		GFF6288	0.77	+0.5
77,693	-		GFF6288	0.77	+0.8
77,693	-		GFF6288	0.77	-0.4
77,693	-		GFF6288	0.77	+0.7
77,693	-		GFF6288	0.77	-0.2
77,693	-		GFF6288	0.77	+0.1
77,693	-		GFF6288	0.77	-0.2
77,693	-		GFF6288	0.77	+0.0
77,740	+		GFF6288	0.85	-0.0
77,740	+		GFF6288	0.85	+0.5
77,740	+		GFF6288	0.85	-0.1
77,740	+		GFF6288	0.85	-0.5
77,740	+		GFF6288	0.85	-0.6
77,740	+		GFF6288	0.85	-0.0
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