Strain Fitness in Variovorax sp. SCN45 around GFF6100

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
115	+		GFF6099	0.36	+0.0
116	-		GFF6099	0.36	+0.4
116	-		GFF6099	0.36	-0.7
132	+		GFF6099	0.41	+0.5
133	-		GFF6099	0.41	-0.6
133	-		GFF6099	0.41	+0.5
133	-		GFF6099	0.41	-0.9
156	+		GFF6099	0.48	-1.1
157	-		GFF6099	0.49	+0.1
428	+		GFF6100	0.25	-1.4
716	+		GFF6100	0.88	-1.0
717	-		GFF6100	0.89	+0.9
717	-		GFF6100	0.89	+0.0
717	-		GFF6100	0.89	-0.5
717	-		GFF6100	0.89	-0.1
863	+				+0.9
863	+				+0.8
864	-				-0.3
864	-				+1.5
864	-				-0.3
1,162	+		GFF6101	0.29	+1.1
1,162	+		GFF6101	0.29	-0.5
1,163	-		GFF6101	0.29	-1.6
1,173	+		GFF6101	0.30	-1.3
1,279	-		GFF6101	0.40	-1.3
1,389	-		GFF6101	0.51	-0.7
1,491	+		GFF6101	0.61	+1.5
1,491	+		GFF6101	0.61	-2.1