Strain Fitness in Variovorax sp. SCN45 around GFF6049

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
108,176	+		GFF6048	0.32	-1.5
108,176	+		GFF6048	0.32	-0.3
108,176	+		GFF6048	0.32	+0.3
108,177	-		GFF6048	0.32	-0.4
108,177	-		GFF6048	0.32	+0.7
108,177	-		GFF6048	0.32	-0.1
108,177	-		GFF6048	0.32	-0.3
108,245	+		GFF6048	0.38	-0.5
108,245	+		GFF6048	0.38	-1.3
108,245	+		GFF6048	0.38	+0.2
108,245	+		GFF6048	0.38	+0.1
108,245	+		GFF6048	0.38	-0.6
108,245	+		GFF6048	0.38	+0.3
108,245	+		GFF6048	0.38	-0.3
108,245	+		GFF6048	0.38	+0.9
108,246	-		GFF6048	0.38	-0.8
108,246	-		GFF6048	0.38	-1.3
108,246	-		GFF6048	0.38	-1.6
108,246	-		GFF6048	0.38	-0.2
108,246	-		GFF6048	0.38	-0.1
108,246	-		GFF6048	0.38	-0.5
108,288	-		GFF6048	0.42	-0.3
108,288	-		GFF6048	0.42	+0.0
108,500	+		GFF6048	0.60	-0.2
108,500	+		GFF6048	0.60	+0.3
108,500	+		GFF6048	0.60	-0.4
108,500	+		GFF6048	0.60	+0.4
108,605	+		GFF6048	0.69	-1.1
108,606	-		GFF6048	0.69	-0.5
108,767	+		GFF6048	0.82	-0.0
108,768	-		GFF6048	0.82	-0.6
108,800	+		GFF6048	0.85	+0.9
108,920	+				-0.9
108,920	+				-0.5
108,920	+				-0.2
108,920	+				-1.0
108,920	+				+0.2
108,920	+				-0.4
108,920	+				-0.6
108,920	+				-0.2
108,921	-				+0.4
108,921	-				+0.3
108,921	-				-1.3
108,921	-				+0.1
108,921	-				+0.5
108,921	-				-0.8
108,921	-				-0.6
108,921	-				+0.8
108,921	-				-0.5
108,921	-				-0.9
108,921	-				+0.6
109,058	+				-0.1
109,058	+				-0.2
109,058	+				-0.3
109,059	-				-0.6
109,059	-				-0.1
109,059	-				+0.5
109,059	-				-0.6
109,059	-				-0.6
109,151	+		GFF6049	0.15	+0.5
109,151	+		GFF6049	0.15	+0.7
109,151	+		GFF6049	0.15	-0.1
109,151	+		GFF6049	0.15	-0.1
109,151	+		GFF6049	0.15	-0.1
109,151	+		GFF6049	0.15	+0.3
109,151	+		GFF6049	0.15	-0.3
109,151	+		GFF6049	0.15	-0.5
109,151	+		GFF6049	0.15	+2.1
109,151	+		GFF6049	0.15	-0.5
109,152	-		GFF6049	0.15	+0.9
109,152	-		GFF6049	0.15	-1.1
109,152	-		GFF6049	0.15	+0.1
109,152	-		GFF6049	0.15	-0.3
109,152	-		GFF6049	0.15	-0.5
109,296	-		GFF6049	0.28	-0.7
109,355	+		GFF6049	0.33	-1.0
109,478	+		GFF6049	0.44	-0.9
109,478	+		GFF6049	0.44	+1.3
109,478	+		GFF6049	0.44	+2.1
109,478	+		GFF6049	0.44	+1.4
109,479	-		GFF6049	0.44	+0.6
109,479	-		GFF6049	0.44	-0.4
109,652	+		GFF6049	0.59	+3.1
109,733	+		GFF6049	0.67	-0.2
109,733	+		GFF6049	0.67	-0.8
109,733	+		GFF6049	0.67	+0.4
109,734	-		GFF6049	0.67	-0.1
109,734	-		GFF6049	0.67	+0.2
109,734	-		GFF6049	0.67	-1.1
109,734	-		GFF6049	0.67	-0.3
109,841	+		GFF6049	0.76	+0.1
109,841	+		GFF6049	0.76	-0.8
109,841	+		GFF6049	0.76	-0.1
109,841	+		GFF6049	0.76	-0.6
109,841	+		GFF6049	0.76	+0.7
109,841	+		GFF6049	0.76	-0.5
109,841	+		GFF6049	0.76	-1.2
109,841	+		GFF6049	0.76	+0.6
109,841	+		GFF6049	0.76	+0.4
109,841	+		GFF6049	0.76	-2.9
109,842	-		GFF6049	0.76	-0.7
109,842	-		GFF6049	0.76	-0.9
109,842	-		GFF6049	0.76	-0.5
109,842	-		GFF6049	0.76	-0.2
109,842	-		GFF6049	0.76	-0.4
109,844	+		GFF6049	0.77	-0.1
109,844	+		GFF6049	0.77	-0.3
109,844	+		GFF6049	0.77	+0.1
109,844	+		GFF6049	0.77	-0.7
109,845	-		GFF6049	0.77	-0.3
109,845	-		GFF6049	0.77	-0.4
109,907	+		GFF6049	0.82	-0.4
109,907	+		GFF6049	0.82	+1.5
109,908	-		GFF6049	0.82	-0.3
109,908	-		GFF6049	0.82	+1.5
109,908	-		GFF6049	0.82	-0.4
109,919	-		GFF6049	0.83	-0.2
109,919	-		GFF6049	0.83	-0.5
109,931	+		GFF6049	0.84	-0.3
109,931	+		GFF6049	0.84	-0.7
109,932	-		GFF6049	0.84	+1.0
109,932	-		GFF6049	0.84	+0.7
109,932	-		GFF6049	0.84	+0.0
109,932	-		GFF6049	0.84	+0.5
109,985	+		GFF6049	0.89	-0.1
109,985	+		GFF6049	0.89	+0.9
109,985	+		GFF6049	0.89	-1.1
109,985	+		GFF6049	0.89	+0.0
109,985	+		GFF6049	0.89	+0.1
109,985	+		GFF6049	0.89	-0.3
109,985	+		GFF6049	0.89	+0.7
109,986	-		GFF6049	0.89	+0.0
109,986	-		GFF6049	0.89	+0.5
110,000	+				-1.9
110,000	+				-0.4
110,000	+				-0.4
110,001	-				+0.1
110,159	+				-1.6
110,160	-				-0.3
110,160	-				-0.5
110,255	+				-0.8
110,255	+				-0.7
110,255	+				-0.1
110,255	+				+0.3
110,255	+				-0.0
110,255	+				-0.3
110,256	-				-0.1
110,256	-				-0.7
110,256	-				-0.3
110,333	-				-1.0
110,626	+		GFF6050	0.29	-1.4
110,626	+		GFF6050	0.29	-1.2
110,626	+		GFF6050	0.29	-0.5
110,626	+		GFF6050	0.29	-0.0
110,626	+		GFF6050	0.29	-0.3
110,626	+		GFF6050	0.29	+0.0
110,627	-		GFF6050	0.29	+0.9
110,627	-		GFF6050	0.29	-2.5
110,627	-		GFF6050	0.29	-0.6
110,627	-		GFF6050	0.29	-0.1
110,627	-		GFF6050	0.29	-0.3
110,627	-		GFF6050	0.29	+1.3
110,627	-		GFF6050	0.29	+0.9
110,845	+		GFF6050	0.45	-0.1
110,845	+		GFF6050	0.45	-1.9
110,845	+		GFF6050	0.45	-0.6
110,845	+		GFF6050	0.45	-0.4
110,845	+		GFF6050	0.45	-0.5
110,845	+		GFF6050	0.45	-0.1
110,845	+		GFF6050	0.45	-1.1
110,845	+		GFF6050	0.45	-0.3
110,846	-		GFF6050	0.45	-0.7
110,846	-		GFF6050	0.45	-0.8
110,846	-		GFF6050	0.45	-0.8
110,846	-		GFF6050	0.45	-0.6
110,846	-		GFF6050	0.45	-1.6
110,846	-		GFF6050	0.45	-0.4