Strain Fitness in Variovorax sp. SCN45 around GFF6032

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
91,464	+				+0.4
91,465	-				-0.9
91,465	-				-1.1
91,465	-				+0.2
91,530	+		GFF6031	0.11	-1.0
91,530	+		GFF6031	0.11	-0.3
91,531	-		GFF6031	0.11	+0.2
91,531	-		GFF6031	0.11	+0.1
91,531	-		GFF6031	0.11	-0.2
91,531	-		GFF6031	0.11	-1.9
91,746	+		GFF6031	0.39	+0.1
91,767	+		GFF6031	0.42	-0.8
91,767	+		GFF6031	0.42	-1.1
91,794	+		GFF6031	0.45	-1.8
91,794	+		GFF6031	0.45	-3.2
91,794	+		GFF6031	0.45	+1.5
91,795	-		GFF6031	0.45	-0.7
91,795	-		GFF6031	0.45	+0.5
91,795	-		GFF6031	0.45	-1.1
92,007	+		GFF6031	0.72	-0.8
92,049	+		GFF6031	0.78	+0.1
92,049	+		GFF6031	0.78	-1.2
92,050	-		GFF6031	0.78	-0.1
92,050	-		GFF6031	0.78	-0.2
92,112	+		GFF6031	0.86	+1.3
92,113	-		GFF6031	0.86	-0.3
92,113	-		GFF6031	0.86	-1.0
92,299	-				+0.3
92,528	+		GFF6032	0.24	-0.6
92,528	+		GFF6032	0.24	+0.9
92,528	+		GFF6032	0.24	+0.2
92,528	+		GFF6032	0.24	-0.8
92,528	+		GFF6032	0.24	-1.8
92,528	+		GFF6032	0.24	+0.4
92,874	-		GFF6032	0.52	-1.3
92,874	-		GFF6032	0.52	-2.3
92,874	-		GFF6032	0.52	-1.1
92,874	-		GFF6032	0.52	-1.2
92,874	-		GFF6032	0.52	+1.5
92,874	-		GFF6032	0.52	-1.6
92,874	-		GFF6032	0.52	-0.6
92,876	+		GFF6032	0.52	-0.6
92,876	+		GFF6032	0.52	-1.6
92,876	+		GFF6032	0.52	-0.8
92,876	+		GFF6032	0.52	-1.6
92,876	+		GFF6032	0.52	-0.8
92,877	-		GFF6032	0.53	-0.1
92,877	-		GFF6032	0.53	-1.3
92,879	+		GFF6032	0.53	+0.5
92,879	+		GFF6032	0.53	-1.6
92,879	+		GFF6032	0.53	-1.4
92,880	-		GFF6032	0.53	-0.2
92,880	-		GFF6032	0.53	-0.7
92,880	-		GFF6032	0.53	-0.0
92,880	-		GFF6032	0.53	-0.1
93,065	+		GFF6032	0.68	-0.9
93,066	-		GFF6032	0.68	+1.1
93,240	-		GFF6032	0.83	-1.8
93,240	-		GFF6032	0.83	-1.1
93,266	+		GFF6032	0.85	+0.1
93,266	+		GFF6032	0.85	-0.4
93,266	+		GFF6032	0.85	-2.1
93,266	+		GFF6032	0.85	+0.0
93,266	+		GFF6032	0.85	-1.3
93,266	+		GFF6032	0.85	-1.8
93,266	+		GFF6032	0.85	-1.3
93,266	+		GFF6032	0.85	-1.6
93,267	-		GFF6032	0.85	-0.6
93,267	-		GFF6032	0.85	-0.9
93,267	-		GFF6032	0.85	-0.1
93,267	-		GFF6032	0.85	-0.1
93,290	+		GFF6032	0.87	-1.1
93,329	+		GFF6032	0.90	+0.8
93,329	+		GFF6032	0.90	+0.0
93,330	-				+0.5
93,330	-				-0.1
93,330	-				-0.6
93,422	+				-0.8
93,422	+				-0.3
93,422	+				-1.2
93,423	-				-0.6
93,423	-				-0.4
93,423	-				-0.9
93,462	+				+0.2
93,552	+				+0.5
93,552	+				-0.9
93,552	+				-0.4
93,552	+				-0.3
93,553	-				+1.5
93,553	-				-0.2
93,733	-		GFF6033	0.29	+0.2
93,744	+		GFF6033	0.30	-0.4
93,744	+		GFF6033	0.30	+0.1
93,744	+		GFF6033	0.30	-1.9
93,744	+		GFF6033	0.30	-0.5
93,744	+		GFF6033	0.30	-1.1
93,745	-		GFF6033	0.31	-0.6
93,745	-		GFF6033	0.31	-0.1
93,745	-		GFF6033	0.31	-0.6
93,745	-		GFF6033	0.31	-0.7
93,745	-		GFF6033	0.31	+0.3
93,745	-		GFF6033	0.31	-0.6
93,745	-		GFF6033	0.31	-1.5
93,745	-		GFF6033	0.31	+0.3
93,882	+		GFF6033	0.45	-0.7
93,882	+		GFF6033	0.45	-0.1
93,883	-		GFF6033	0.45	-0.4
93,883	-		GFF6033	0.45	-1.0
93,883	-		GFF6033	0.45	+0.5
93,883	-		GFF6033	0.45	+0.4
94,003	-		GFF6033	0.58	-1.0
94,265	+		GFF6033	0.86	-0.5
94,265	+		GFF6033	0.86	-0.6
94,265	+		GFF6033	0.86	-0.5
94,265	+		GFF6033	0.86	-0.8
94,266	-		GFF6033	0.87	-0.9
94,266	-		GFF6033	0.87	-1.6
94,266	-		GFF6033	0.87	-0.3
94,305	+				-0.2
94,306	-				-0.1
94,317	+				-0.4
94,318	-				-0.8
94,328	+				-0.9
94,329	-				-0.4
94,338	+				-0.8
94,338	+				-2.3
94,338	+				-0.8
94,338	+				+2.5
94,338	+				+0.7
94,338	+				-0.5
94,339	-				+1.2
94,339	-				+0.8
94,339	-				-1.6
94,339	-				-0.5
94,339	-				-0.1
94,339	-				-0.5
94,390	+				+0.9
94,390	+				+0.2
94,390	+				-0.1
94,391	-				-0.9
94,391	-				-0.2
94,391	-				+0.1
94,391	-				+0.2
94,391	-				+1.3
94,391	-				+0.5
94,402	+				+1.5
94,402	+				-0.4
94,402	+				-1.6
94,402	+				-0.5
94,402	+				-0.3
94,403	-				-0.7
94,403	-				-0.7
94,403	-				+0.8
94,403	-				+0.3
94,403	-				-0.1