Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6014 and GFF6015 are separated by 13 nucleotides GFF6015 and GFF6016 are separated by 85 nucleotides
GFF6014 - Transcriptional regulator, LysR family, at 74,338 to 75,225
GFF6014
GFF6015 - Transcriptional regulator PA0877, LysR family, at 75,239 to 76,129
GFF6015
GFF6016 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 76,215 to 77,144
GFF6016
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.467 kb on + strand, within GFF6014 at 74.468 kb on - strand, within GFF6014 at 74.468 kb on - strand, within GFF6014 at 74.495 kb on + strand, within GFF6014 at 74.495 kb on + strand, within GFF6014 at 74.495 kb on + strand, within GFF6014 at 74.496 kb on - strand, within GFF6014 at 74.742 kb on - strand, within GFF6014 at 75.804 kb on + strand, within GFF6015 at 75.804 kb on + strand, within GFF6015 at 75.805 kb on - strand, within GFF6015 at 76.086 kb on + strand at 76.086 kb on + strand at 76.087 kb on - strand at 76.432 kb on + strand, within GFF6016 at 76.433 kb on - strand, within GFF6016 at 76.636 kb on + strand, within GFF6016 at 76.637 kb on - strand, within GFF6016 at 76.637 kb on - strand, within GFF6016 at 76.687 kb on - strand, within GFF6016 at 76.687 kb on - strand, within GFF6016 at 76.741 kb on + strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.742 kb on - strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.744 kb on + strand, within GFF6016 at 76.745 kb on - strand, within GFF6016 at 76.753 kb on + strand, within GFF6016
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 74,467 + GFF6014 0.15 -1.1 74,468 - GFF6014 0.15 +0.8 74,468 - GFF6014 0.15 -0.5 74,495 + GFF6014 0.18 -0.7 74,495 + GFF6014 0.18 -1.2 74,495 + GFF6014 0.18 -0.1 74,496 - GFF6014 0.18 -0.7 74,742 - GFF6014 0.45 -0.2 75,804 + GFF6015 0.63 -1.1 75,804 + GFF6015 0.63 -1.5 75,805 - GFF6015 0.64 -1.1 76,086 + -1.3 76,086 + -1.7 76,087 - +1.9 76,432 + GFF6016 0.23 -2.1 76,433 - GFF6016 0.23 -0.3 76,636 + GFF6016 0.45 -0.2 76,637 - GFF6016 0.45 +0.3 76,637 - GFF6016 0.45 -0.4 76,687 - GFF6016 0.51 -0.3 76,687 - GFF6016 0.51 -0.8 76,741 + GFF6016 0.57 -1.1 76,742 - GFF6016 0.57 +0.5 76,742 - GFF6016 0.57 -0.1 76,742 - GFF6016 0.57 -1.5 76,742 - GFF6016 0.57 -0.8 76,744 + GFF6016 0.57 -1.5 76,744 + GFF6016 0.57 -1.3 76,744 + GFF6016 0.57 -0.1 76,745 - GFF6016 0.57 -0.1 76,753 + GFF6016 0.58 -0.7
Or see this region's nucleotide sequence