Strain Fitness in Variovorax sp. SCN45 around GFF5980

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
33,851	+				-1.1
34,067	+				+0.2
34,068	-				-1.1
34,507	+		GFF5979	0.61	+0.3
34,507	+		GFF5979	0.61	-0.5
34,700	+		GFF5979	0.86	+0.5
34,732	+				+1.5
34,795	+				-1.4
34,796	-				+0.5
34,796	-				+0.2
34,812	+				-0.1
34,812	+				-0.6
34,812	+				+0.5
34,813	-				-0.3
34,813	-				-0.9
34,813	-				-1.1
34,821	+				-0.9
34,822	-				+0.0
34,965	+		GFF5980	0.35	+0.3
34,966	-		GFF5980	0.36	+0.8
34,984	-		GFF5980	0.40	-0.8
34,984	-		GFF5980	0.40	+0.9
34,993	-		GFF5980	0.42	+0.1
35,037	+		GFF5980	0.52	-1.3
35,037	+		GFF5980	0.52	+0.5
35,038	-		GFF5980	0.52	+0.5
35,038	-		GFF5980	0.52	-0.6
35,038	-		GFF5980	0.52	-0.0
35,601	+		GFF5981	0.73	+1.2
35,602	-		GFF5981	0.73	-0.2
35,713	+				-0.6
35,793	+				-0.1
35,794	-				-0.6
35,865	+		GFF5982	0.10	-2.3
35,865	+		GFF5982	0.10	-1.0
35,866	-		GFF5982	0.10	+0.9
35,866	-		GFF5982	0.10	-0.3
35,866	-		GFF5982	0.10	+0.2
35,866	-		GFF5982	0.10	+0.2