Strain Fitness in Variovorax sp. SCN45 around GFF5901

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
116,713	+		GFF5899	0.11	-1.3
116,713	+		GFF5899	0.11	-0.3
116,713	+		GFF5899	0.11	+1.3
116,713	+		GFF5899	0.11	-0.6
116,713	+		GFF5899	0.11	+0.7
116,714	-		GFF5899	0.11	-0.0
116,714	-		GFF5899	0.11	-0.0
116,719	+		GFF5899	0.12	-0.1
117,016	+		GFF5899	0.54	-0.4
117,016	+		GFF5899	0.54	+0.1
117,016	+		GFF5899	0.54	-0.9
117,016	+		GFF5899	0.54	+0.4
117,016	+		GFF5899	0.54	-1.0
117,016	+		GFF5899	0.54	+1.2
117,017	-		GFF5899	0.54	+0.3
117,049	+		GFF5899	0.59	+0.1
117,049	+		GFF5899	0.59	-0.9
117,049	+		GFF5899	0.59	+0.8
117,049	+		GFF5899	0.59	+0.0
117,050	-		GFF5899	0.59	-0.5
117,050	-		GFF5899	0.59	+0.3
117,050	-		GFF5899	0.59	+0.4
117,050	-		GFF5899	0.59	+0.1
117,061	+		GFF5899	0.60	-0.6
117,062	-		GFF5899	0.61	+1.1
117,062	-		GFF5899	0.61	+1.9
117,062	-		GFF5899	0.61	-0.5
117,062	-		GFF5899	0.61	-2.1
117,385	+		GFF5900	0.15	-0.2
117,385	+		GFF5900	0.15	-0.9
117,386	-		GFF5900	0.15	-0.3
117,386	-		GFF5900	0.15	+0.4
117,386	-		GFF5900	0.15	+0.2
117,386	-		GFF5900	0.15	+0.7
117,486	+		GFF5900	0.75	+0.5
117,486	+		GFF5900	0.75	+0.9
117,486	+		GFF5900	0.75	-0.2
117,486	+		GFF5900	0.75	+0.4
117,486	+		GFF5900	0.75	+1.0
117,487	-		GFF5900	0.76	-1.2
117,487	-		GFF5900	0.76	-0.1
117,487	-		GFF5900	0.76	-1.1
117,487	-		GFF5900	0.76	-0.2
117,577	+				+0.3
117,583	+				+0.7
117,584	-				+0.9
117,584	-				+0.9
117,587	+				+0.1
117,587	+				+1.3
117,587	+				-0.8
117,587	+				-0.6
117,588	-				-0.0
117,588	-				-0.4
117,588	-				+0.3
117,588	-				-0.2
117,588	-				+1.5
117,588	-				+0.3
117,590	+				+2.1
117,591	-				-0.5
117,593	+				-0.9
117,593	+				+0.0
117,594	-				+0.5
117,594	-				-0.4
117,594	-				+0.7
117,596	+				-0.3
117,596	+				-0.0
117,596	+				+0.5
117,596	+				-0.3
117,596	+				-2.3
117,596	+				+0.1
117,597	-				-0.3
117,597	-				+1.2
117,597	-				-0.2
117,613	+				-0.3
117,614	-				+0.2
117,617	+				+0.4
117,617	+				-0.5
117,617	+				-0.2
117,617	+				-0.4
117,617	+				-0.5
117,617	+				-0.1
117,617	+				-0.3
117,618	-				-1.6
117,618	-				-0.3
117,618	-				-1.8
117,618	-				-0.2
117,618	-				-0.0
117,618	-				-1.2
117,618	-				-0.3
117,618	-				-1.1
117,618	-				-0.5
117,624	+				+0.0
117,624	+				-0.4
117,625	-				+0.1
117,625	-				-0.0
117,625	-				-0.2
117,841	+		GFF5901	0.45	-0.8
117,841	+		GFF5901	0.45	-1.6
117,841	+		GFF5901	0.45	-0.4
117,841	+		GFF5901	0.45	-0.4
117,841	+		GFF5901	0.45	-0.6
117,842	-		GFF5901	0.46	-0.3
117,842	-		GFF5901	0.46	-1.2
117,842	-		GFF5901	0.46	-1.5
118,036	+				-0.2
118,037	-				+0.1
118,037	-				-0.3
118,037	-				-2.3
118,042	+				-0.3
118,063	+				-0.3
118,064	-				-0.9
118,064	-				-0.8
118,064	-				-0.2
118,064	-				-0.2
118,064	-				+0.0
118,064	-				+1.0
118,064	-				-0.3
118,397	+		GFF5902	0.22	+1.7
118,397	+		GFF5902	0.22	+0.7
118,397	+		GFF5902	0.22	-1.4
118,398	-		GFF5902	0.22	-1.2
118,398	-		GFF5902	0.22	-1.9
118,799	+		GFF5902	0.67	-0.5
118,799	+		GFF5902	0.67	-1.2
118,800	-		GFF5902	0.67	+1.7
118,800	-		GFF5902	0.67	-0.5
118,800	-		GFF5902	0.67	+0.1
118,800	-		GFF5902	0.67	-0.1
118,826	+		GFF5902	0.70	-0.4
118,826	+		GFF5902	0.70	-1.1
118,827	-		GFF5902	0.70	-1.4
118,832	+		GFF5902	0.71	+0.2
118,832	+		GFF5902	0.71	+0.0
118,832	+		GFF5902	0.71	+1.7
118,833	-		GFF5902	0.71	+0.1
118,833	-		GFF5902	0.71	+0.1
118,833	-		GFF5902	0.71	+1.0
118,907	+		GFF5902	0.79	+0.3
118,908	-		GFF5902	0.79	+1.7
118,908	-		GFF5902	0.79	-2.1