Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5847 and GFF5848 overlap by 1 nucleotides GFF5848 and GFF5849 are separated by 13 nucleotides GFF5849 and GFF5850 are separated by 147 nucleotides
GFF5847 - putative membrane protein, at 24,091 to 26,745
GFF5847
GFF5848 - Flagellar motor protein, at 26,745 to 27,404
GFF5848
GFF5849 - FIG01210206: hypothetical protein, at 27,418 to 28,077
GFF5849
GFF5850 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 28,225 to 29,625
GFF5850
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1 at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.583 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.935 kb on - strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 26,632 + +0.7 26,632 + -0.6 26,632 + -1.6 26,632 + +0.4 26,632 + +0.3 26,632 + -0.4 26,633 - +1.1 26,633 - +0.9 26,633 - -0.9 26,633 - -0.5 26,633 - +0.0 26,633 - -0.9 27,099 + GFF5848 0.54 -0.3 27,099 + GFF5848 0.54 -0.8 27,099 + GFF5848 0.54 +0.8 27,100 - GFF5848 0.54 -0.0 27,100 - GFF5848 0.54 +0.5 27,100 - GFF5848 0.54 +0.9 27,583 + GFF5849 0.25 +0.7 27,934 + GFF5849 0.78 -0.8 27,934 + GFF5849 0.78 +0.3 27,934 + GFF5849 0.78 -1.1 27,935 - GFF5849 0.78 -0.3 27,955 + GFF5849 0.81 -0.3 27,955 + GFF5849 0.81 -1.1 27,956 - GFF5849 0.82 -1.4 27,956 - GFF5849 0.82 +0.9 27,956 - GFF5849 0.82 -0.5
Or see this region's nucleotide sequence