Strain Fitness in Variovorax sp. SCN45 around GFF5822

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
200,035	+				+0.7
200,080	+				+1.6
200,089	+				-0.5
200,089	+				-1.4
200,090	-				-0.0
200,106	-				-1.0
200,111	+				+0.4
200,112	-				+1.4
200,176	+				-0.0
200,200	+		GFF5821	0.10	+0.0
200,201	-		GFF5821	0.11	+1.0
200,347	+		GFF5821	0.28	-0.8
200,348	-		GFF5821	0.28	-0.5
200,348	-		GFF5821	0.28	-1.5
200,348	-		GFF5821	0.28	-0.1
200,384	+		GFF5821	0.33	-0.5
200,384	+		GFF5821	0.33	-0.0
200,385	-		GFF5821	0.33	-0.4
200,385	-		GFF5821	0.33	+0.2
200,402	+		GFF5821	0.35	+1.6
200,403	-		GFF5821	0.35	+0.2
200,403	-		GFF5821	0.35	-1.1
200,474	+		GFF5821	0.44	-2.4
200,475	-		GFF5821	0.44	+0.3
200,475	-		GFF5821	0.44	+0.4
200,478	+		GFF5821	0.44	+0.1
200,478	+		GFF5821	0.44	-0.4
200,480	+		GFF5821	0.44	-0.7
200,480	+		GFF5821	0.44	-0.5
200,480	+		GFF5821	0.44	-0.0
200,481	-		GFF5821	0.44	-0.8
200,481	-		GFF5821	0.44	-0.6
200,513	+		GFF5821	0.48	-0.4
200,513	+		GFF5821	0.48	-1.2
200,623	-		GFF5821	0.62	-0.3
200,623	-		GFF5821	0.62	-0.6
200,624	+		GFF5821	0.62	-0.2
200,624	+		GFF5821	0.62	-0.7
200,624	+		GFF5821	0.62	-0.4
200,625	-		GFF5821	0.62	-0.0
200,718	+		GFF5821	0.73	-0.4
200,768	+		GFF5821	0.79	-0.0
200,769	-		GFF5821	0.79	-0.2
200,769	-		GFF5821	0.79	+0.2
200,781	-		GFF5821	0.81	-0.4
200,781	-		GFF5821	0.81	+0.6
200,838	+		GFF5821	0.88	-0.4
200,839	-		GFF5821	0.88	+0.5
200,839	-		GFF5821	0.88	-0.4
200,839	-		GFF5821	0.88	-0.2
200,861	+				-0.0
200,861	+				+0.1
200,862	-				-1.0
200,932	+				-0.3
200,933	-				-0.6
200,938	+				-1.0
200,938	+				-0.1
200,939	-				-0.8
200,939	-				-1.6
200,972	-				-0.2
200,985	-				-0.7
200,985	-				-0.9
200,985	-				-1.1
201,093	+		GFF5822	0.17	+0.4
201,106	+		GFF5822	0.18	-0.8
201,462	+		GFF5822	0.56	-0.9
201,463	-		GFF5822	0.56	-0.4
201,463	-		GFF5822	0.56	-0.6
201,463	-		GFF5822	0.56	-0.2
201,541	+		GFF5822	0.64	-0.1
201,541	+		GFF5822	0.64	+0.1
201,541	+		GFF5822	0.64	-0.1
201,541	+		GFF5822	0.64	-1.6
201,565	+		GFF5822	0.66	-0.9
201,565	+		GFF5822	0.66	-2.3
201,614	+		GFF5822	0.72	+0.0
201,614	+		GFF5822	0.72	+0.4
201,615	-		GFF5822	0.72	-0.1
201,628	+		GFF5822	0.73	-1.2
201,628	+		GFF5822	0.73	+3.1
201,628	+		GFF5822	0.73	-0.1
201,631	+		GFF5822	0.73	-0.0
201,631	+		GFF5822	0.73	-1.2
201,631	+		GFF5822	0.73	-0.3
201,631	+		GFF5822	0.73	-1.6
201,631	+		GFF5822	0.73	+0.3
201,631	+		GFF5822	0.73	+0.2
201,631	+		GFF5822	0.73	-1.8
201,631	+		GFF5822	0.73	-0.6
201,632	-		GFF5822	0.74	-0.6
201,632	-		GFF5822	0.74	-0.9
201,632	-		GFF5822	0.74	-0.6
201,632	-		GFF5822	0.74	+0.8
201,638	+		GFF5822	0.74	-0.8
201,639	-		GFF5822	0.74	-0.7
201,755	-		GFF5822	0.86	-0.4
201,828	+				-0.9
201,828	+				+0.2
201,829	-				-0.6
201,829	-				-0.4
201,921	-				+0.8
201,935	+				+0.1
201,962	-				+1.6
201,962	-				-0.0
202,059	+				-1.0
202,071	+				-0.2
202,153	-				-1.0