Strain Fitness in Variovorax sp. SCN45 around GFF5427

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
50,322	+				+0.5
50,322	+				-0.6
50,322	+				+1.9
50,322	+				-0.5
50,323	-				+1.9
50,323	-				-0.7
50,323	-				-0.9
50,323	-				-0.1
50,323	-				-1.4
50,323	-				-0.6
50,323	-				-1.1
50,323	-				+1.1
50,323	-				+0.5
50,323	-				+0.7
50,323	-				-0.3
50,323	-				+0.7
50,536	+				-2.1
50,536	+				+0.2
50,537	-				-0.9
50,537	-				+1.9
50,571	+				-0.2
50,572	-				-0.6
50,572	-				-0.1
50,572	-				+1.6
50,572	-				+0.3
50,572	-				-1.3
50,618	+				+0.1
50,618	+				+0.3
50,618	+				+1.3
50,618	+				+0.6
50,618	+				+0.9
50,618	+				-0.3
50,619	-				+0.1
50,619	-				+1.3
50,619	-				+0.2
50,619	-				-0.0
50,619	-				+0.7
50,619	-				+0.2
50,619	-				-0.7
50,619	-				+0.3
50,619	-				-0.1
50,619	-				+0.1
50,619	-				-0.6
50,619	-				-0.0
50,640	+				-0.1
50,640	+				+1.2
50,640	+				-1.4
50,641	-				+0.1
50,641	-				-0.1
50,641	-				-0.7
50,641	-				+0.3
50,784	+				-0.3
50,784	+				+0.6
50,784	+				-1.3
50,784	+				-0.0
50,784	+				-0.9
50,785	-				-0.5
50,785	-				-0.3
50,785	-				-0.7
50,785	-				-0.2
50,785	-				-0.8
50,785	-				-1.0
50,785	-				-1.7
50,827	+		GFF5426	0.14	-0.5
50,827	+		GFF5426	0.14	-0.8
50,827	+		GFF5426	0.14	-1.0
50,827	+		GFF5426	0.14	-0.7
50,827	+		GFF5426	0.14	+1.3
50,827	+		GFF5426	0.14	-1.1
50,827	+		GFF5426	0.14	+0.4
50,827	+		GFF5426	0.14	-0.4
50,827	+		GFF5426	0.14	-0.5
50,827	+		GFF5426	0.14	+0.0
50,827	+		GFF5426	0.14	-0.4
50,827	+		GFF5426	0.14	-0.9
50,827	+		GFF5426	0.14	-0.8
50,828	-		GFF5426	0.14	-0.5
50,828	-		GFF5426	0.14	+0.9
50,828	-		GFF5426	0.14	+0.3
50,828	-		GFF5426	0.14	-1.6
50,828	-		GFF5426	0.14	+0.1
50,828	-		GFF5426	0.14	-0.3
50,828	-		GFF5426	0.14	-1.1
50,828	-		GFF5426	0.14	-0.7
50,828	-		GFF5426	0.14	-1.9
50,828	-		GFF5426	0.14	-0.9
50,828	-		GFF5426	0.14	-0.6
50,828	-		GFF5426	0.14	+0.2
50,828	-		GFF5426	0.14	-0.9
50,931	+		GFF5426	0.33	-0.7
50,931	+		GFF5426	0.33	+0.4
50,932	-		GFF5426	0.33	-0.9
51,015	+		GFF5426	0.48	-0.2
51,015	+		GFF5426	0.48	-1.3
51,047	+		GFF5426	0.54	-2.5
51,621	+				-0.0
51,621	+				-0.4
51,621	+				-0.6
51,621	+				-1.1
51,621	+				-0.0
51,621	+				+0.9
51,622	-				-0.3
51,622	-				-0.4
51,622	-				-1.0
51,622	-				+0.3
51,622	-				-0.0
51,622	-				+0.1
51,762	+		GFF5428	0.25	-0.7
51,762	+		GFF5428	0.25	-0.0
51,763	-		GFF5428	0.25	+0.2
51,763	-		GFF5428	0.25	-0.1
51,840	+		GFF5428	0.39	-0.5
51,840	+		GFF5428	0.39	-0.1
51,840	+		GFF5428	0.39	-0.4
51,841	-		GFF5428	0.39	-0.9
51,841	-		GFF5428	0.39	-0.0
51,841	-		GFF5428	0.39	-0.5
51,841	-		GFF5428	0.39	+0.1
51,841	-		GFF5428	0.39	-0.4
52,116	+		GFF5428	0.88	-0.9
52,116	+		GFF5428	0.88	-0.1
52,116	+		GFF5428	0.88	-0.1
52,117	-		GFF5428	0.89	-0.4
52,117	-		GFF5428	0.89	-0.6
52,117	-		GFF5428	0.89	-0.2
52,117	-		GFF5428	0.89	+1.3
52,117	-		GFF5428	0.89	-0.1
52,119	+		GFF5428	0.89	-0.1
52,120	-		GFF5428	0.89	-0.0
52,120	-		GFF5428	0.89	-0.1
52,120	-		GFF5428	0.89	+0.2
52,120	-		GFF5428	0.89	-0.3
52,120	-		GFF5428	0.89	+0.3
52,194	+				+0.4
52,194	+				+1.6
52,194	+				-0.4
52,194	+				+1.9
52,194	+				+0.2
52,195	-				-0.8
52,195	-				-1.8
52,195	-				-0.3
52,195	-				-1.8
52,195	-				+0.1
52,195	-				+0.4
52,223	+				-0.6
52,223	+				+0.1
52,223	+				-0.2
52,224	-				+0.4
52,224	-				+0.4
52,224	-				+0.3
52,247	+				-0.6
52,247	+				-0.4
52,247	+				-0.5
52,247	+				-1.7
52,247	+				+0.8
52,247	+				+0.1
52,247	+				-0.5
52,247	+				+0.3
52,247	+				-0.0
52,247	+				-0.0
52,248	-				+0.3
52,248	-				+0.2
52,248	-				+0.6
52,248	-				-0.0
52,248	-				+0.7
52,248	-				-0.5
52,248	-				-1.4
52,248	-				-0.3
52,248	-				+0.6
52,248	-				-1.5
52,248	-				-0.7
52,248	-				-0.7
52,248	-				-0.3
52,248	-				-1.7
52,271	+				-0.7
52,271	+				-2.1
52,271	+				+0.5
52,271	+				-0.0
52,271	+				+0.9
52,271	+				-0.1
52,271	+				+1.9
52,272	-				+0.1
52,272	-				-0.2
52,272	-				+0.3
52,272	-				-2.0
52,272	-				-1.1
52,307	+				-0.2
52,308	-				+0.4
52,308	-				-0.3
52,451	+		GFF5429	0.11	-0.5
52,451	+		GFF5429	0.11	-1.7
52,451	+		GFF5429	0.11	+0.5
52,451	+		GFF5429	0.11	+0.4
52,451	+		GFF5429	0.11	-0.8
52,451	+		GFF5429	0.11	-1.0
52,451	+		GFF5429	0.11	+0.1
52,451	+		GFF5429	0.11	-0.8
52,451	+		GFF5429	0.11	+0.3
52,451	+		GFF5429	0.11	-0.8
52,451	+		GFF5429	0.11	+0.4
52,452	-		GFF5429	0.11	+0.1
52,452	-		GFF5429	0.11	+0.7
52,452	-		GFF5429	0.11	-1.5
52,452	-		GFF5429	0.11	+0.3
52,452	-		GFF5429	0.11	+0.4
52,452	-		GFF5429	0.11	-0.3
52,452	-		GFF5429	0.11	-0.0
52,452	-		GFF5429	0.11	+0.9
52,452	-		GFF5429	0.11	-0.8
52,502	+		GFF5429	0.13	-0.4
52,502	+		GFF5429	0.13	-0.3
52,502	+		GFF5429	0.13	+0.1
52,502	+		GFF5429	0.13	-0.2
52,502	+		GFF5429	0.13	+0.9
52,502	+		GFF5429	0.13	+1.1
52,502	+		GFF5429	0.13	-0.3
52,502	+		GFF5429	0.13	-2.8
52,503	-		GFF5429	0.13	-1.6
52,503	-		GFF5429	0.13	-0.6
52,503	-		GFF5429	0.13	-0.4
52,503	-		GFF5429	0.13	+0.3
52,503	-		GFF5429	0.13	-0.5
52,503	-		GFF5429	0.13	-0.4
52,503	-		GFF5429	0.13	+0.1
52,503	-		GFF5429	0.13	-0.9
52,538	+		GFF5429	0.15	-0.1
52,538	+		GFF5429	0.15	-0.4
52,571	+		GFF5429	0.16	-0.5
52,572	-		GFF5429	0.16	+0.9