Strain Fitness in Variovorax sp. SCN45 around GFF5253

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5252 and GFF5253 are separated by 1 nucleotidesGFF5253 and GFF5254 are separated by 31 nucleotides GFF5252 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 116,516 to 117,496 GFF5252 GFF5253 - Amidohydrolase family protein, at 117,498 to 118,769 GFF5253 GFF5254 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 118,801 to 120,384 GFF5254 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 116.529 kb on + strandat 116.529 kb on + strandat 116.529 kb on + strandat 116.529 kb on + strandat 116.529 kb on + strandat 116.530 kb on - strandat 116.530 kb on - strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.592 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.600 kb on + strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.601 kb on - strandat 116.867 kb on + strand, within GFF5252at 116.867 kb on + strand, within GFF5252at 116.867 kb on + strand, within GFF5252at 116.867 kb on + strand, within GFF5252at 116.867 kb on + strand, within GFF5252at 116.867 kb on + strand, within GFF5252at 116.868 kb on - strand, within GFF5252at 116.868 kb on - strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.170 kb on + strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.171 kb on - strand, within GFF5252at 117.389 kb on + strand, within GFF5252at 117.389 kb on + strand, within GFF5252at 117.390 kb on - strand, within GFF5252at 117.414 kb on - strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.446 kb on + strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.447 kb on - strandat 117.571 kb on - strandat 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.636 kb on + strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.637 kb on - strand, within GFF5253at 117.895 kb on - strand, within GFF5253at 118.084 kb on - strand, within GFF5253at 118.149 kb on + strand, within GFF5253at 118.150 kb on - strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.438 kb on - strand, within GFF5253at 118.438 kb on - strand, within GFF5253at 118.587 kb on + strand, within GFF5253at 118.588 kb on - strand, within GFF5253at 118.588 kb on - strand, within GFF5253at 118.641 kb on + strand, within GFF5253at 118.911 kb on - strandat 118.969 kb on + strand, within GFF5254at 118.969 kb on + strand, within GFF5254at 118.969 kb on + strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 119.339 kb on - strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.435 kb on - strand, within GFF5254at 119.659 kb on + strand, within GFF5254at 119.659 kb on + strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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116,529 + -0.5
116,529 + -0.1
116,529 + -0.2
116,529 + -0.1
116,529 + -0.6
116,530 - -0.2
116,530 - +1.3
116,592 + -0.4
116,592 + +0.3
116,592 + -0.5
116,592 + -0.4
116,592 + -0.5
116,600 + +0.7
116,600 + +1.6
116,600 + +1.6
116,600 + -0.1
116,600 + -0.4
116,600 + -0.3
116,600 + +0.2
116,600 + -0.0
116,600 + +0.4
116,600 + +0.1
116,601 - -0.5
116,601 - -0.2
116,601 - +0.2
116,601 - +0.1
116,601 - -0.5
116,601 - -1.8
116,601 - -0.4
116,601 - -0.1
116,867 + GFF5252 0.36 -0.1
116,867 + GFF5252 0.36 -0.5
116,867 + GFF5252 0.36 -0.4
116,867 + GFF5252 0.36 +0.3
116,867 + GFF5252 0.36 -1.7
116,867 + GFF5252 0.36 -0.5
116,868 - GFF5252 0.36 -0.1
116,868 - GFF5252 0.36 -2.0
117,170 + GFF5252 0.67 -0.2
117,170 + GFF5252 0.67 +1.1
117,170 + GFF5252 0.67 +0.0
117,170 + GFF5252 0.67 +0.6
117,170 + GFF5252 0.67 +1.6
117,170 + GFF5252 0.67 -0.3
117,170 + GFF5252 0.67 -0.5
117,170 + GFF5252 0.67 +0.2
117,171 - GFF5252 0.67 -0.4
117,171 - GFF5252 0.67 -0.1
117,171 - GFF5252 0.67 -0.3
117,171 - GFF5252 0.67 +0.1
117,171 - GFF5252 0.67 -0.3
117,171 - GFF5252 0.67 -0.1
117,171 - GFF5252 0.67 -0.8
117,171 - GFF5252 0.67 +0.3
117,171 - GFF5252 0.67 -0.5
117,171 - GFF5252 0.67 -0.4
117,389 + GFF5252 0.89 +0.7
117,389 + GFF5252 0.89 +0.0
117,390 - GFF5252 0.89 +0.6
117,414 - +0.0
117,446 + -0.1
117,446 + -0.4
117,446 + +0.5
117,446 + -1.1
117,446 + +0.4
117,446 + -3.7
117,446 + +0.4
117,446 + +0.3
117,446 + -0.3
117,447 - +0.3
117,447 - -0.3
117,447 - -0.7
117,447 - -0.1
117,447 - -1.9
117,447 - +1.1
117,447 - +0.1
117,447 - -0.6
117,571 - -0.3
117,636 + GFF5253 0.11 -0.1
117,636 + GFF5253 0.11 -0.9
117,636 + GFF5253 0.11 -1.1
117,636 + GFF5253 0.11 -0.3
117,636 + GFF5253 0.11 -0.3
117,636 + GFF5253 0.11 +0.6
117,636 + GFF5253 0.11 +0.0
117,636 + GFF5253 0.11 -0.2
117,636 + GFF5253 0.11 -0.0
117,636 + GFF5253 0.11 -0.4
117,637 - GFF5253 0.11 -1.5
117,637 - GFF5253 0.11 -0.6
117,637 - GFF5253 0.11 -1.3
117,637 - GFF5253 0.11 -0.3
117,637 - GFF5253 0.11 -0.2
117,637 - GFF5253 0.11 -0.5
117,637 - GFF5253 0.11 -1.6
117,895 - GFF5253 0.31 +1.2
118,084 - GFF5253 0.46 +0.1
118,149 + GFF5253 0.51 -1.1
118,150 - GFF5253 0.51 -0.1
118,425 + GFF5253 0.73 +0.1
118,425 + GFF5253 0.73 -0.8
118,425 + GFF5253 0.73 +1.2
118,425 + GFF5253 0.73 +0.3
118,425 + GFF5253 0.73 -0.2
118,426 - GFF5253 0.73 -0.6
118,426 - GFF5253 0.73 -1.2
118,426 - GFF5253 0.73 -0.3
118,426 - GFF5253 0.73 -1.0
118,426 - GFF5253 0.73 -2.0
118,426 - GFF5253 0.73 -2.2
118,437 + GFF5253 0.74 +1.1
118,437 + GFF5253 0.74 -0.0
118,437 + GFF5253 0.74 -0.8
118,438 - GFF5253 0.74 +0.8
118,438 - GFF5253 0.74 -1.8
118,587 + GFF5253 0.86 -0.8
118,588 - GFF5253 0.86 -0.8
118,588 - GFF5253 0.86 -0.2
118,641 + GFF5253 0.90 -0.2
118,911 - +0.5
118,969 + GFF5254 0.11 +0.2
118,969 + GFF5254 0.11 +0.2
118,969 + GFF5254 0.11 +1.3
118,970 - GFF5254 0.11 -1.0
118,970 - GFF5254 0.11 -0.5
118,970 - GFF5254 0.11 +2.0
118,970 - GFF5254 0.11 +0.1
119,339 - GFF5254 0.34 +0.6
119,434 + GFF5254 0.40 -0.4
119,434 + GFF5254 0.40 +0.1
119,434 + GFF5254 0.40 +1.6
119,434 + GFF5254 0.40 +0.8
119,434 + GFF5254 0.40 -0.1
119,435 - GFF5254 0.40 +0.1
119,659 + GFF5254 0.54 -0.7
119,659 + GFF5254 0.54 -1.0
119,660 - GFF5254 0.54 -1.4
119,660 - GFF5254 0.54 +0.9
119,716 + GFF5254 0.58 -0.3
119,716 + GFF5254 0.58 +0.8
119,717 - GFF5254 0.58 +1.0
119,717 - GFF5254 0.58 -0.9
119,717 - GFF5254 0.58 +0.6
119,717 - GFF5254 0.58 +0.0

Or see this region's nucleotide sequence