Strain Fitness in Variovorax sp. SCN45 around GFF5191

Experiment: Community=Kojac gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5190 and GFF5191 are separated by 114 nucleotidesGFF5191 and GFF5192 are separated by 144 nucleotides GFF5190 - L-arabinose 1-dehydrogenase (EC 1.1.1.376), at 48,205 to 48,978 GFF5190 GFF5191 - Galactose-binding protein regulator, at 49,093 to 50,052 GFF5191 GFF5192 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 50,197 to 51,663 GFF5192 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.128 kb on + strandat 48.547 kb on + strand, within GFF5190at 48.547 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.686 kb on - strand, within GFF5190at 48.694 kb on + strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strandat 49.118 kb on + strandat 49.119 kb on - strandat 49.119 kb on - strandat 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.266 kb on - strand, within GFF5191at 49.266 kb on - strand, within GFF5191at 49.269 kb on - strand, within GFF5191at 49.269 kb on - strand, within GFF5191at 49.541 kb on + strand, within GFF5191at 49.640 kb on - strand, within GFF5191at 50.033 kb on - strandat 50.042 kb on + strandat 50.042 kb on + strandat 50.042 kb on + strandat 50.043 kb on - strandat 50.043 kb on - strandat 50.043 kb on - strandat 50.059 kb on + strandat 50.059 kb on + strandat 50.149 kb on + strandat 50.233 kb on + strandat 50.233 kb on + strandat 50.234 kb on - strandat 50.234 kb on - strandat 50.234 kb on - strandat 50.417 kb on + strand, within GFF5192at 50.417 kb on + strand, within GFF5192at 50.417 kb on + strand, within GFF5192at 50.417 kb on + strand, within GFF5192at 50.418 kb on - strand, within GFF5192

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
remove
48,112 + +0.6
48,112 + +0.6
48,112 + -0.4
48,112 + -0.1
48,113 - -0.0
48,113 - -0.2
48,113 - -0.0
48,113 - +0.1
48,128 + -1.1
48,547 + GFF5190 0.44 -0.4
48,547 + GFF5190 0.44 -2.0
48,550 + GFF5190 0.45 -0.5
48,550 + GFF5190 0.45 +2.6
48,550 + GFF5190 0.45 +1.8
48,550 + GFF5190 0.45 +0.6
48,550 + GFF5190 0.45 -0.8
48,551 - GFF5190 0.45 +0.1
48,551 - GFF5190 0.45 -0.5
48,551 - GFF5190 0.45 -0.3
48,551 - GFF5190 0.45 -1.1
48,551 - GFF5190 0.45 +0.4
48,686 - GFF5190 0.62 -0.2
48,694 + GFF5190 0.63 +0.8
48,695 - GFF5190 0.63 -1.3
48,695 - GFF5190 0.63 +0.0
48,976 + +0.6
48,976 + +0.5
48,976 + +0.1
48,976 + +0.7
48,976 + -0.1
48,976 + -0.1
48,977 - -0.3
48,977 - -1.2
48,977 - -0.1
48,977 - +1.6
48,977 - -0.5
48,985 - -0.4
48,985 - +0.2
48,985 - +0.8
49,118 + +0.4
49,119 - -0.2
49,119 - -0.7
49,265 + GFF5191 0.18 -0.4
49,265 + GFF5191 0.18 +0.3
49,265 + GFF5191 0.18 -0.4
49,265 + GFF5191 0.18 -0.0
49,265 + GFF5191 0.18 -0.0
49,266 - GFF5191 0.18 +0.2
49,266 - GFF5191 0.18 -0.1
49,269 - GFF5191 0.18 -0.9
49,269 - GFF5191 0.18 -0.0
49,541 + GFF5191 0.47 +0.1
49,640 - GFF5191 0.57 -0.0
50,033 - +1.2
50,042 + -0.2
50,042 + -0.0
50,042 + +0.2
50,043 - -1.9
50,043 - -0.3
50,043 - -0.7
50,059 + +0.2
50,059 + -0.0
50,149 + -0.2
50,233 + +0.2
50,233 + +0.6
50,234 - -0.0
50,234 - -0.3
50,234 - -1.0
50,417 + GFF5192 0.15 -0.6
50,417 + GFF5192 0.15 -0.3
50,417 + GFF5192 0.15 -0.0
50,417 + GFF5192 0.15 -0.9
50,418 - GFF5192 0.15 +0.4

Or see this region's nucleotide sequence