Strain Fitness in Variovorax sp. SCN45 around GFF5171

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5170 and GFF5171 are separated by 8 nucleotidesGFF5171 and GFF5172 are separated by 138 nucleotides GFF5170 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 22,279 to 23,706 GFF5170 GFF5171 - Transcriptional regulator, AsnC family, at 23,715 to 24,206 GFF5171 GFF5172 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 24,345 to 26,225 GFF5172 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1at 24.226 kb on + strandat 24.307 kb on + strandat 24.307 kb on + strandat 24.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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24,226 + -0.9
24,307 + -0.8
24,307 + +0.8
24,308 - -0.4

Or see this region's nucleotide sequence