Strain Fitness in Variovorax sp. SCN45 around GFF506

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF504 and GFF505 are separated by 24 nucleotidesGFF505 and GFF506 are separated by 126 nucleotidesGFF506 and GFF507 are separated by 62 nucleotidesGFF507 and GFF508 overlap by 4 nucleotides GFF504 - SAM-dependent methyltransferases, at 546,551 to 547,399 GFF504 GFF505 - no description, at 547,424 to 547,996 GFF505 GFF506 - hypothetical protein, at 548,123 to 548,629 GFF506 GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585 GFF507 GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649 GFF508 Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1 2 3at 547.154 kb on + strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.275 kb on - strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.373 kb on + strandat 547.373 kb on + strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.480 kb on - strandat 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.657 kb on - strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.716 kb on + strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.998 kb on + strandat 548.139 kb on + strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.184 kb on + strand, within GFF506at 548.185 kb on - strand, within GFF506at 548.235 kb on + strand, within GFF506at 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.614 kb on - strandat 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.922 kb on - strand, within GFF507at 548.967 kb on - strand, within GFF507at 549.059 kb on + strand, within GFF507at 549.122 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.323 kb on + strand, within GFF507at 549.324 kb on - strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.545 kb on + strandat 549.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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547,154 + GFF504 0.71 -0.2
547,154 + GFF504 0.71 -1.0
547,155 - GFF504 0.71 -0.1
547,155 - GFF504 0.71 -0.2
547,275 - GFF504 0.85 -0.5
547,280 + GFF504 0.86 +0.4
547,280 + GFF504 0.86 +0.4
547,280 + GFF504 0.86 -1.3
547,280 + GFF504 0.86 -0.4
547,281 - GFF504 0.86 -0.2
547,281 - GFF504 0.86 +0.0
547,281 - GFF504 0.86 -0.7
547,373 + -0.3
547,373 + -1.3
547,374 - +0.3
547,374 - +0.1
547,374 - -1.9
547,374 - -1.1
547,479 + +0.1
547,479 + -1.6
547,479 + -1.6
547,480 - -0.5
547,533 + GFF505 0.19 -0.3
547,533 + GFF505 0.19 -0.4
547,533 + GFF505 0.19 -2.2
547,533 + GFF505 0.19 +0.4
547,534 - GFF505 0.19 +0.2
547,534 - GFF505 0.19 +0.6
547,549 - GFF505 0.22 -0.4
547,549 - GFF505 0.22 +1.2
547,560 + GFF505 0.24 -1.4
547,560 + GFF505 0.24 -0.0
547,561 - GFF505 0.24 +0.9
547,561 - GFF505 0.24 +3.2
547,561 - GFF505 0.24 -1.3
547,561 - GFF505 0.24 -1.3
547,657 - GFF505 0.41 +0.3
547,707 + GFF505 0.49 -0.2
547,707 + GFF505 0.49 -1.7
547,707 + GFF505 0.49 +0.5
547,707 + GFF505 0.49 -0.5
547,708 - GFF505 0.50 -0.2
547,708 - GFF505 0.50 +0.4
547,708 - GFF505 0.50 +0.1
547,708 - GFF505 0.50 -0.6
547,708 - GFF505 0.50 -0.3
547,708 - GFF505 0.50 -0.3
547,716 + GFF505 0.51 +0.6
547,717 - GFF505 0.51 -0.4
547,717 - GFF505 0.51 -0.4
547,717 - GFF505 0.51 -0.4
547,717 - GFF505 0.51 -0.6
547,717 - GFF505 0.51 +1.2
547,764 + GFF505 0.59 +0.1
547,764 + GFF505 0.59 -0.4
547,764 + GFF505 0.59 +0.2
547,764 + GFF505 0.59 -0.4
547,764 + GFF505 0.59 +0.4
547,765 - GFF505 0.60 -0.2
547,765 - GFF505 0.60 -0.0
547,765 - GFF505 0.60 -0.8
547,765 - GFF505 0.60 +0.2
547,765 - GFF505 0.60 -1.8
547,998 + +0.2
548,139 + -1.1
548,140 - -0.6
548,140 - +0.8
548,140 - -0.2
548,184 + GFF506 0.12 -0.0
548,185 - GFF506 0.12 -0.9
548,235 + GFF506 0.22 -0.1
548,613 + -0.8
548,613 + +0.6
548,613 + -0.2
548,613 + -0.3
548,613 + +0.1
548,613 + +0.1
548,614 - +0.4
548,921 + GFF507 0.26 +0.8
548,921 + GFF507 0.26 -0.7
548,921 + GFF507 0.26 +0.0
548,921 + GFF507 0.26 -0.3
548,921 + GFF507 0.26 +0.7
548,922 - GFF507 0.26 -0.8
548,967 - GFF507 0.31 -1.6
549,059 + GFF507 0.41 -0.9
549,122 + GFF507 0.48 -0.1
549,261 + GFF507 0.64 +0.0
549,261 + GFF507 0.64 -0.7
549,261 + GFF507 0.64 -0.6
549,261 + GFF507 0.64 -0.2
549,261 + GFF507 0.64 +0.8
549,323 + GFF507 0.71 -1.6
549,324 - GFF507 0.71 -0.2
549,338 + GFF507 0.72 -0.7
549,338 + GFF507 0.72 +1.2
549,338 + GFF507 0.72 -0.8
549,338 + GFF507 0.72 -0.3
549,338 + GFF507 0.72 -2.6
549,338 + GFF507 0.72 -0.4
549,338 + GFF507 0.72 -0.5
549,338 + GFF507 0.72 -0.5
549,339 - GFF507 0.72 -1.0
549,339 - GFF507 0.72 -2.7
549,339 - GFF507 0.72 +0.8
549,339 - GFF507 0.72 +0.0
549,339 - GFF507 0.72 -1.2
549,339 - GFF507 0.72 -0.7
549,545 + -0.9
549,546 - +0.1

Or see this region's nucleotide sequence