Strain Fitness in Variovorax sp. SCN45 around GFF5015

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5014 and GFF5015 are separated by 74 nucleotidesGFF5015 and GFF5016 are separated by 32 nucleotides GFF5014 - Acyl-CoA dehydrogenase, at 116,775 to 117,950 GFF5014 GFF5015 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 118,025 to 118,783 GFF5015 GFF5016 - ATP-dependent RNA helicase RhlE (EC 3.6.4.13), at 118,816 to 120,099 GFF5016 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.231 kb on + strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.232 kb on - strand, within GFF5014at 117.416 kb on + strand, within GFF5014at 117.416 kb on + strand, within GFF5014at 117.416 kb on + strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.417 kb on - strand, within GFF5014at 117.453 kb on + strand, within GFF5014at 117.453 kb on + strand, within GFF5014at 117.453 kb on + strand, within GFF5014at 117.453 kb on + strand, within GFF5014at 117.453 kb on + strand, within GFF5014at 117.454 kb on - strand, within GFF5014at 117.683 kb on - strand, within GFF5014at 117.867 kb on + strandat 117.867 kb on + strandat 117.867 kb on + strandat 117.868 kb on - strandat 117.868 kb on - strandat 117.868 kb on - strandat 117.948 kb on + strandat 117.949 kb on - strandat 117.949 kb on - strandat 117.949 kb on - strandat 118.095 kb on + strandat 118.095 kb on + strandat 118.112 kb on + strand, within GFF5015at 118.112 kb on + strand, within GFF5015at 118.113 kb on - strand, within GFF5015at 118.113 kb on - strand, within GFF5015at 118.113 kb on - strand, within GFF5015at 118.295 kb on + strand, within GFF5015at 118.295 kb on + strand, within GFF5015at 118.296 kb on - strand, within GFF5015at 118.296 kb on - strand, within GFF5015at 118.505 kb on + strand, within GFF5015at 118.682 kb on + strand, within GFF5015at 118.682 kb on + strand, within GFF5015at 118.683 kb on - strand, within GFF5015at 118.683 kb on - strand, within GFF5015at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.105 kb on + strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.106 kb on - strand, within GFF5016at 119.131 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.132 kb on + strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.133 kb on - strand, within GFF5016at 119.279 kb on + strand, within GFF5016at 119.279 kb on + strand, within GFF5016at 119.279 kb on + strand, within GFF5016at 119.279 kb on + strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.280 kb on - strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.294 kb on + strand, within GFF5016at 119.295 kb on - strand, within GFF5016at 119.295 kb on - strand, within GFF5016at 119.295 kb on - strand, within GFF5016at 119.295 kb on - strand, within GFF5016at 119.295 kb on - strand, within GFF5016at 119.295 kb on - strand, within GFF5016

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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117,231 + GFF5014 0.39 -0.1
117,231 + GFF5014 0.39 -0.9
117,231 + GFF5014 0.39 -0.5
117,231 + GFF5014 0.39 -0.1
117,231 + GFF5014 0.39 -0.5
117,231 + GFF5014 0.39 -0.3
117,231 + GFF5014 0.39 -1.3
117,232 - GFF5014 0.39 +1.8
117,232 - GFF5014 0.39 -0.1
117,232 - GFF5014 0.39 -0.6
117,232 - GFF5014 0.39 -0.2
117,232 - GFF5014 0.39 +0.5
117,232 - GFF5014 0.39 -1.5
117,232 - GFF5014 0.39 +0.3
117,232 - GFF5014 0.39 -0.2
117,416 + GFF5014 0.55 +0.0
117,416 + GFF5014 0.55 -0.1
117,416 + GFF5014 0.55 -1.2
117,417 - GFF5014 0.55 -0.6
117,417 - GFF5014 0.55 -0.5
117,417 - GFF5014 0.55 -0.2
117,417 - GFF5014 0.55 +1.1
117,417 - GFF5014 0.55 -0.0
117,417 - GFF5014 0.55 -0.7
117,453 + GFF5014 0.58 +0.9
117,453 + GFF5014 0.58 -0.2
117,453 + GFF5014 0.58 -0.6
117,453 + GFF5014 0.58 +0.4
117,453 + GFF5014 0.58 -1.0
117,454 - GFF5014 0.58 -1.6
117,683 - GFF5014 0.77 -0.3
117,867 + +0.0
117,867 + -0.1
117,867 + +0.2
117,868 - +0.8
117,868 - -0.5
117,868 - -0.5
117,948 + -0.7
117,949 - +0.2
117,949 - -1.0
117,949 - -1.0
118,095 + +0.4
118,095 + -0.9
118,112 + GFF5015 0.11 +1.4
118,112 + GFF5015 0.11 -0.2
118,113 - GFF5015 0.12 -0.5
118,113 - GFF5015 0.12 +0.0
118,113 - GFF5015 0.12 -0.0
118,295 + GFF5015 0.36 +1.0
118,295 + GFF5015 0.36 +0.3
118,296 - GFF5015 0.36 -0.4
118,296 - GFF5015 0.36 +0.9
118,505 + GFF5015 0.63 -0.6
118,682 + GFF5015 0.87 +0.2
118,682 + GFF5015 0.87 +0.4
118,683 - GFF5015 0.87 -0.3
118,683 - GFF5015 0.87 +0.1
119,105 + GFF5016 0.23 +0.2
119,105 + GFF5016 0.23 +2.0
119,105 + GFF5016 0.23 +0.5
119,105 + GFF5016 0.23 -0.5
119,105 + GFF5016 0.23 -0.2
119,105 + GFF5016 0.23 -0.4
119,105 + GFF5016 0.23 -1.3
119,105 + GFF5016 0.23 -0.0
119,105 + GFF5016 0.23 -0.6
119,105 + GFF5016 0.23 +0.5
119,105 + GFF5016 0.23 +0.1
119,105 + GFF5016 0.23 +1.8
119,105 + GFF5016 0.23 -0.2
119,105 + GFF5016 0.23 -0.6
119,105 + GFF5016 0.23 -0.5
119,106 - GFF5016 0.23 +0.5
119,106 - GFF5016 0.23 -0.6
119,106 - GFF5016 0.23 +0.0
119,106 - GFF5016 0.23 +0.7
119,106 - GFF5016 0.23 +0.0
119,106 - GFF5016 0.23 +3.4
119,106 - GFF5016 0.23 -1.1
119,106 - GFF5016 0.23 -0.4
119,106 - GFF5016 0.23 +0.4
119,106 - GFF5016 0.23 -1.0
119,106 - GFF5016 0.23 -0.4
119,106 - GFF5016 0.23 -0.3
119,106 - GFF5016 0.23 +0.3
119,106 - GFF5016 0.23 -0.5
119,106 - GFF5016 0.23 +0.0
119,131 + GFF5016 0.25 -0.4
119,132 + GFF5016 0.25 +0.2
119,132 + GFF5016 0.25 -0.2
119,132 + GFF5016 0.25 +0.7
119,132 + GFF5016 0.25 +0.9
119,132 + GFF5016 0.25 +0.7
119,132 + GFF5016 0.25 -0.8
119,132 + GFF5016 0.25 -0.4
119,132 + GFF5016 0.25 +0.4
119,133 - GFF5016 0.25 +0.6
119,133 - GFF5016 0.25 +0.0
119,133 - GFF5016 0.25 +0.2
119,133 - GFF5016 0.25 -0.8
119,133 - GFF5016 0.25 -0.2
119,133 - GFF5016 0.25 -0.6
119,133 - GFF5016 0.25 -0.1
119,279 + GFF5016 0.36 +0.2
119,279 + GFF5016 0.36 -0.5
119,279 + GFF5016 0.36 -0.6
119,279 + GFF5016 0.36 +0.8
119,280 - GFF5016 0.36 -0.2
119,280 - GFF5016 0.36 -1.8
119,280 - GFF5016 0.36 -0.2
119,280 - GFF5016 0.36 +0.1
119,280 - GFF5016 0.36 -0.5
119,280 - GFF5016 0.36 +2.1
119,280 - GFF5016 0.36 +0.1
119,280 - GFF5016 0.36 -0.8
119,280 - GFF5016 0.36 -0.6
119,294 + GFF5016 0.37 +0.4
119,294 + GFF5016 0.37 -0.3
119,294 + GFF5016 0.37 -0.2
119,294 + GFF5016 0.37 -0.0
119,294 + GFF5016 0.37 +0.1
119,294 + GFF5016 0.37 -0.5
119,294 + GFF5016 0.37 -0.3
119,294 + GFF5016 0.37 -0.6
119,294 + GFF5016 0.37 -0.2
119,295 - GFF5016 0.37 -0.5
119,295 - GFF5016 0.37 +0.1
119,295 - GFF5016 0.37 -0.0
119,295 - GFF5016 0.37 +0.1
119,295 - GFF5016 0.37 +0.1
119,295 - GFF5016 0.37 -0.2

Or see this region's nucleotide sequence