Strain Fitness in Variovorax sp. SCN45 around GFF4990

Experiment: Community=Kojac gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4989 and GFF4990 are separated by 60 nucleotidesGFF4990 and GFF4991 are separated by 91 nucleotidesGFF4991 and GFF4992 are separated by 140 nucleotides GFF4989 - Transcriptional regulator, LysR family, at 89,837 to 90,733 GFF4989 GFF4990 - Acyl-CoA hydrolase (EC 3.1.2.20), at 90,794 to 91,243 GFF4990 GFF4991 - Polyhydroxyalkanoate granule-associated protein PhaF, at 91,335 to 91,802 GFF4991 GFF4992 - Transcriptional regulator, AcrR family, at 91,943 to 92,668 GFF4992 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.882 kb on + strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 89.883 kb on - strandat 90.038 kb on + strand, within GFF4989at 90.038 kb on + strand, within GFF4989at 90.039 kb on - strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.311 kb on + strand, within GFF4989at 90.312 kb on - strand, within GFF4989at 90.312 kb on - strand, within GFF4989at 90.638 kb on + strand, within GFF4989at 90.639 kb on - strand, within GFF4989at 90.751 kb on + strandat 90.751 kb on + strandat 90.751 kb on + strandat 90.752 kb on - strandat 90.926 kb on + strand, within GFF4990at 90.926 kb on + strand, within GFF4990at 90.927 kb on - strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.013 kb on + strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.014 kb on - strand, within GFF4990at 91.254 kb on + strandat 91.254 kb on + strandat 91.268 kb on + strandat 91.268 kb on + strandat 91.268 kb on + strandat 91.269 kb on - strandat 91.292 kb on - strandat 91.489 kb on - strand, within GFF4991at 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.906 kb on + strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 91.907 kb on - strandat 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.078 kb on + strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.079 kb on - strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.081 kb on + strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.082 kb on - strand, within GFF4992at 92.087 kb on + strand, within GFF4992at 92.088 kb on - strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.120 kb on + strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.121 kb on - strand, within GFF4992at 92.129 kb on + strand, within GFF4992at 92.129 kb on + strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.130 kb on - strand, within GFF4992at 92.243 kb on + strand, within GFF4992at 92.243 kb on + strand, within GFF4992

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
remove
89,882 + -0.6
89,882 + -0.9
89,882 + -0.5
89,882 + +1.1
89,882 + -0.6
89,882 + -0.4
89,882 + +0.4
89,882 + -0.5
89,883 - +0.0
89,883 - -0.5
89,883 - -0.4
89,883 - -0.8
89,883 - -0.0
89,883 - +0.3
90,038 + GFF4989 0.22 -0.5
90,038 + GFF4989 0.22 -0.8
90,039 - GFF4989 0.23 -1.6
90,311 + GFF4989 0.53 -1.4
90,311 + GFF4989 0.53 +0.2
90,311 + GFF4989 0.53 -0.3
90,311 + GFF4989 0.53 +0.1
90,311 + GFF4989 0.53 -1.3
90,312 - GFF4989 0.53 -0.3
90,312 - GFF4989 0.53 +0.0
90,638 + GFF4989 0.89 +1.2
90,639 - GFF4989 0.89 -0.4
90,751 + +2.2
90,751 + +1.2
90,751 + -0.5
90,752 - -0.3
90,926 + GFF4990 0.29 +0.2
90,926 + GFF4990 0.29 -0.2
90,927 - GFF4990 0.30 +0.7
91,013 + GFF4990 0.49 +1.4
91,013 + GFF4990 0.49 +2.8
91,013 + GFF4990 0.49 +1.8
91,013 + GFF4990 0.49 +0.4
91,014 - GFF4990 0.49 -0.5
91,014 - GFF4990 0.49 +0.0
91,014 - GFF4990 0.49 -1.4
91,014 - GFF4990 0.49 +0.1
91,014 - GFF4990 0.49 +1.4
91,014 - GFF4990 0.49 +0.3
91,014 - GFF4990 0.49 -0.4
91,014 - GFF4990 0.49 +0.3
91,014 - GFF4990 0.49 +0.3
91,014 - GFF4990 0.49 -0.9
91,014 - GFF4990 0.49 -0.4
91,254 + +0.6
91,254 + +0.8
91,268 + -1.4
91,268 + -0.3
91,268 + -0.3
91,269 - -1.1
91,292 - +0.2
91,489 - GFF4991 0.33 -0.4
91,906 + +0.1
91,906 + +0.6
91,906 + -1.6
91,906 + -0.7
91,906 + -0.7
91,906 + +0.8
91,907 - +0.5
91,907 - -0.4
91,907 - -0.6
91,907 - +1.4
91,907 - +0.2
91,907 - +0.7
91,907 - -0.5
92,078 + GFF4992 0.19 -0.7
92,078 + GFF4992 0.19 -0.3
92,078 + GFF4992 0.19 +1.4
92,078 + GFF4992 0.19 -1.1
92,078 + GFF4992 0.19 -0.9
92,078 + GFF4992 0.19 -1.1
92,079 - GFF4992 0.19 -1.5
92,079 - GFF4992 0.19 +0.0
92,079 - GFF4992 0.19 -0.4
92,079 - GFF4992 0.19 -0.2
92,079 - GFF4992 0.19 +0.1
92,079 - GFF4992 0.19 -1.9
92,079 - GFF4992 0.19 -0.4
92,079 - GFF4992 0.19 -3.4
92,079 - GFF4992 0.19 +0.5
92,079 - GFF4992 0.19 +0.5
92,079 - GFF4992 0.19 +0.1
92,079 - GFF4992 0.19 -0.2
92,079 - GFF4992 0.19 +0.7
92,079 - GFF4992 0.19 +0.0
92,079 - GFF4992 0.19 +0.4
92,081 + GFF4992 0.19 +0.2
92,081 + GFF4992 0.19 -1.1
92,081 + GFF4992 0.19 -0.2
92,081 + GFF4992 0.19 -0.5
92,081 + GFF4992 0.19 +1.8
92,081 + GFF4992 0.19 -0.9
92,081 + GFF4992 0.19 -1.0
92,081 + GFF4992 0.19 -0.3
92,081 + GFF4992 0.19 -2.2
92,081 + GFF4992 0.19 -0.5
92,081 + GFF4992 0.19 -0.8
92,081 + GFF4992 0.19 +0.0
92,081 + GFF4992 0.19 -0.8
92,081 + GFF4992 0.19 -0.7
92,081 + GFF4992 0.19 -0.6
92,081 + GFF4992 0.19 +1.0
92,081 + GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 +0.4
92,082 - GFF4992 0.19 -0.3
92,082 - GFF4992 0.19 +0.0
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -0.4
92,082 - GFF4992 0.19 -2.0
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -0.9
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -2.4
92,082 - GFF4992 0.19 +0.4
92,082 - GFF4992 0.19 -0.6
92,082 - GFF4992 0.19 -0.4
92,082 - GFF4992 0.19 -0.2
92,082 - GFF4992 0.19 -0.7
92,082 - GFF4992 0.19 -0.9
92,082 - GFF4992 0.19 -0.2
92,087 + GFF4992 0.20 -0.5
92,088 - GFF4992 0.20 +0.5
92,120 + GFF4992 0.24 -1.3
92,120 + GFF4992 0.24 -0.5
92,120 + GFF4992 0.24 +0.8
92,120 + GFF4992 0.24 -0.7
92,120 + GFF4992 0.24 -0.7
92,120 + GFF4992 0.24 +1.2
92,120 + GFF4992 0.24 -0.1
92,121 - GFF4992 0.25 -0.5
92,121 - GFF4992 0.25 -0.2
92,121 - GFF4992 0.25 -0.6
92,121 - GFF4992 0.25 -1.0
92,129 + GFF4992 0.26 -0.2
92,129 + GFF4992 0.26 -0.3
92,130 - GFF4992 0.26 +0.5
92,130 - GFF4992 0.26 -0.6
92,130 - GFF4992 0.26 +0.8
92,130 - GFF4992 0.26 +0.3
92,130 - GFF4992 0.26 -0.1
92,243 + GFF4992 0.41 -0.2
92,243 + GFF4992 0.41 -0.4

Or see this region's nucleotide sequence