Strain Fitness in Variovorax sp. SCN45 around GFF4940

Experiment: Community=Kojac gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=1
32,337	+				+1.1
32,338	-				-0.5
32,368	+				+1.8
32,368	+				+1.3
32,368	+				-0.9
32,368	+				+0.1
32,368	+				-1.1
32,368	+				+1.4
32,368	+				-1.7
32,368	+				-0.4
32,368	+				+0.6
32,368	+				+1.6
32,368	+				-1.2
32,368	+				-0.4
32,369	-				-1.8
32,369	-				-0.9
32,369	-				-0.4
32,369	-				+0.0
32,542	+		GFF4939	0.21	-0.1
32,542	+		GFF4939	0.21	-0.7
32,543	-		GFF4939	0.21	-0.6
32,543	-		GFF4939	0.21	+0.5
32,543	-		GFF4939	0.21	-1.3
32,543	-		GFF4939	0.21	-1.4
32,543	-		GFF4939	0.21	-0.2
32,726	+		GFF4939	0.50	-0.2
32,726	+		GFF4939	0.50	+0.0
32,726	+		GFF4939	0.50	-0.6
32,726	+		GFF4939	0.50	-0.4
32,727	-		GFF4939	0.50	+0.8
32,727	-		GFF4939	0.50	-0.7
32,727	-		GFF4939	0.50	-0.7
32,727	-		GFF4939	0.50	+0.6
32,771	+		GFF4939	0.57	+0.9
32,771	+		GFF4939	0.57	+0.0
32,771	+		GFF4939	0.57	-0.8
32,772	-		GFF4939	0.58	-0.3
32,772	-		GFF4939	0.58	-0.6
32,772	-		GFF4939	0.58	-0.3
32,789	+		GFF4939	0.60	-0.5
32,789	+		GFF4939	0.60	-0.8
32,789	+		GFF4939	0.60	+0.2
32,789	+		GFF4939	0.60	+1.1
32,789	+		GFF4939	0.60	+0.0
32,790	-		GFF4939	0.60	-0.4
32,790	-		GFF4939	0.60	+0.6
32,790	-		GFF4939	0.60	-0.7
32,790	-		GFF4939	0.60	-1.4
32,790	-		GFF4939	0.60	-0.2
32,790	-		GFF4939	0.60	-0.8
32,905	+		GFF4939	0.79	-0.1
32,905	+		GFF4939	0.79	+0.2
32,906	-		GFF4939	0.79	+0.1
32,906	-		GFF4939	0.79	-1.1
32,906	-		GFF4939	0.79	-0.6
32,906	-		GFF4939	0.79	-1.1
32,906	-		GFF4939	0.79	+0.2
32,906	-		GFF4939	0.79	-0.9
33,046	-				-0.6
33,046	-				+0.3
33,122	-				-0.2
33,122	-				-0.5
33,126	+				-0.7
33,126	+				-0.5
33,126	+				-1.0
33,126	+				-1.1
33,126	+				+1.2
33,126	+				-0.3
33,126	+				-0.5
33,127	-				+1.8
33,127	-				+0.4
33,127	-				+1.2
33,452	+		GFF4940	0.34	-1.8
33,452	+		GFF4940	0.34	-1.2
33,452	+		GFF4940	0.34	+0.0
33,452	+		GFF4940	0.34	-0.6
33,452	+		GFF4940	0.34	-0.5
33,453	-		GFF4940	0.35	-0.7
33,453	-		GFF4940	0.35	+0.7
33,453	-		GFF4940	0.35	+0.8
33,453	-		GFF4940	0.35	-1.0
33,453	-		GFF4940	0.35	+0.8
33,791	+		GFF4940	0.82	+0.8
33,791	+		GFF4940	0.82	-0.4
33,791	+		GFF4940	0.82	-0.4
33,792	-		GFF4940	0.82	-1.7
33,792	-		GFF4940	0.82	-0.9
33,978	+				+0.6
33,978	+				-0.4
33,978	+				-0.5
33,979	-				+0.3
34,122	+		GFF4941	0.43	+0.4
34,122	+		GFF4941	0.43	+1.0
34,122	+		GFF4941	0.43	+0.2
34,122	+		GFF4941	0.43	-0.5
34,122	+		GFF4941	0.43	-0.3
34,122	+		GFF4941	0.43	+0.8
34,123	-		GFF4941	0.43	+0.2
34,130	+		GFF4941	0.45	+0.1
34,131	-		GFF4941	0.45	-0.5
34,131	-		GFF4941	0.45	-0.7
34,131	-		GFF4941	0.45	-1.3
34,267	+		GFF4941	0.77	-1.8
34,268	-		GFF4941	0.78	-1.0
34,314	+		GFF4941	0.89	-0.3