Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4773 and GFF4774 are separated by 1 nucleotides GFF4774 and GFF4775 are separated by 64 nucleotides
GFF4773 - Broad-specificity amino acid ABC transporter, ATP-binding protein 1, at 141,697 to 142,467
GFF4773
GFF4774 - Broad-specificity amino acid ABC transporter, ATP-binding protein 2, at 142,469 to 143,176
GFF4774
GFF4775 - Broad-specificity amino acid ABC transporter, substrate-binding protein, at 143,241 to 144,437
GFF4775
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.573 kb on + strand at 141.574 kb on - strand at 141.589 kb on + strand at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.353 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.426 kb on + strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.085 kb on - strand, within GFF4774 at 143.358 kb on + strand at 143.358 kb on + strand at 143.359 kb on - strand at 143.601 kb on + strand, within GFF4775 at 143.601 kb on + strand, within GFF4775 at 143.602 kb on - strand, within GFF4775 at 143.602 kb on - strand, within GFF4775 at 143.656 kb on - strand, within GFF4775 at 143.656 kb on - strand, within GFF4775 at 143.757 kb on + strand, within GFF4775 at 143.757 kb on + strand, within GFF4775 at 144.069 kb on + strand, within GFF4775 at 144.069 kb on + strand, within GFF4775 at 144.160 kb on - strand, within GFF4775
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 141,487 + -0.3 141,487 + -0.1 141,487 + -1.6 141,487 + -0.7 141,487 + -1.0 141,487 + -0.1 141,488 - -0.7 141,488 - -0.4 141,488 - -0.4 141,488 - -0.3 141,488 - +1.3 141,488 - -1.1 141,573 + -0.6 141,574 - -0.0 141,589 + +0.6 142,033 + GFF4773 0.44 -1.0 142,033 + GFF4773 0.44 -0.7 142,033 + GFF4773 0.44 -0.2 142,034 - GFF4773 0.44 -1.3 142,034 - GFF4773 0.44 -0.0 142,353 - GFF4773 0.85 -0.7 142,388 - GFF4773 0.90 +0.3 142,388 - GFF4773 0.90 -0.7 142,426 + +2.3 142,427 - +0.0 142,427 - -0.4 142,427 - +0.4 142,427 - +0.4 142,823 + GFF4774 0.50 +0.2 142,823 + GFF4774 0.50 -0.3 142,823 + GFF4774 0.50 -1.7 142,823 + GFF4774 0.50 -0.6 142,823 + GFF4774 0.50 -0.2 142,824 - GFF4774 0.50 -1.6 142,824 - GFF4774 0.50 -0.0 142,824 - GFF4774 0.50 -1.0 142,824 - GFF4774 0.50 -0.4 142,824 - GFF4774 0.50 -1.5 142,824 - GFF4774 0.50 -0.7 142,824 - GFF4774 0.50 +1.3 143,024 + GFF4774 0.78 -0.4 143,024 + GFF4774 0.78 -1.9 143,024 + GFF4774 0.78 -0.1 143,024 + GFF4774 0.78 -1.2 143,025 - GFF4774 0.79 +1.3 143,025 - GFF4774 0.79 -1.3 143,085 - GFF4774 0.87 -0.5 143,358 + +0.4 143,358 + +0.2 143,359 - -0.4 143,601 + GFF4775 0.30 +0.3 143,601 + GFF4775 0.30 -2.0 143,602 - GFF4775 0.30 +0.3 143,602 - GFF4775 0.30 -0.8 143,656 - GFF4775 0.35 -0.5 143,656 - GFF4775 0.35 -0.6 143,757 + GFF4775 0.43 -0.2 143,757 + GFF4775 0.43 -0.3 144,069 + GFF4775 0.69 +1.3 144,069 + GFF4775 0.69 -0.5 144,160 - GFF4775 0.77 -0.2
Or see this region's nucleotide sequence