Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4772 and GFF4773 are separated by 268 nucleotides GFF4773 and GFF4774 are separated by 1 nucleotides GFF4774 and GFF4775 are separated by 64 nucleotides
GFF4772 - D-mannose isomerase (EC 5.3.1.7), at 140,220 to 141,428
GFF4772
GFF4773 - Broad-specificity amino acid ABC transporter, ATP-binding protein 1, at 141,697 to 142,467
GFF4773
GFF4774 - Broad-specificity amino acid ABC transporter, ATP-binding protein 2, at 142,469 to 143,176
GFF4774
GFF4775 - Broad-specificity amino acid ABC transporter, substrate-binding protein, at 143,241 to 144,437
GFF4775
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.732 kb on - strand, within GFF4772 at 140.732 kb on - strand, within GFF4772 at 140.732 kb on - strand, within GFF4772 at 140.761 kb on + strand, within GFF4772 at 140.761 kb on + strand, within GFF4772 at 140.866 kb on + strand, within GFF4772 at 140.867 kb on - strand, within GFF4772 at 140.957 kb on - strand, within GFF4772 at 141.085 kb on + strand, within GFF4772 at 141.085 kb on + strand, within GFF4772 at 141.086 kb on - strand, within GFF4772 at 141.148 kb on + strand, within GFF4772 at 141.149 kb on - strand, within GFF4772 at 141.149 kb on - strand, within GFF4772 at 141.239 kb on - strand, within GFF4772 at 141.301 kb on + strand, within GFF4772 at 141.301 kb on + strand, within GFF4772 at 141.302 kb on - strand, within GFF4772 at 141.302 kb on - strand, within GFF4772 at 141.323 kb on - strand at 141.323 kb on - strand at 141.368 kb on - strand at 141.368 kb on - strand at 141.368 kb on - strand at 141.443 kb on - strand at 141.443 kb on - strand at 141.443 kb on - strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.487 kb on + strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.488 kb on - strand at 141.573 kb on + strand at 141.574 kb on - strand at 141.589 kb on + strand at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.033 kb on + strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.034 kb on - strand, within GFF4773 at 142.353 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.388 kb on - strand, within GFF4773 at 142.426 kb on + strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.823 kb on + strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 142.824 kb on - strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.024 kb on + strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.025 kb on - strand, within GFF4774 at 143.085 kb on - strand, within GFF4774 at 143.358 kb on + strand at 143.358 kb on + strand at 143.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 140,732 - GFF4772 0.42 +0.2 140,732 - GFF4772 0.42 -0.1 140,732 - GFF4772 0.42 -0.8 140,761 + GFF4772 0.45 -0.0 140,761 + GFF4772 0.45 -0.5 140,866 + GFF4772 0.53 -0.9 140,867 - GFF4772 0.54 -1.3 140,957 - GFF4772 0.61 -0.0 141,085 + GFF4772 0.72 -1.0 141,085 + GFF4772 0.72 +1.3 141,086 - GFF4772 0.72 +0.4 141,148 + GFF4772 0.77 +0.5 141,149 - GFF4772 0.77 -0.3 141,149 - GFF4772 0.77 -0.6 141,239 - GFF4772 0.84 -0.7 141,301 + GFF4772 0.89 -1.6 141,301 + GFF4772 0.89 +0.8 141,302 - GFF4772 0.89 +0.7 141,302 - GFF4772 0.89 -0.7 141,323 - -0.1 141,323 - -0.2 141,368 - -0.3 141,368 - +0.2 141,368 - -1.1 141,443 - +0.9 141,443 - -0.6 141,443 - +0.3 141,487 + -0.3 141,487 + -0.1 141,487 + -1.6 141,487 + -0.7 141,487 + -1.0 141,487 + -0.1 141,488 - -0.7 141,488 - -0.4 141,488 - -0.4 141,488 - -0.3 141,488 - +1.3 141,488 - -1.1 141,573 + -0.6 141,574 - -0.0 141,589 + +0.6 142,033 + GFF4773 0.44 -1.0 142,033 + GFF4773 0.44 -0.7 142,033 + GFF4773 0.44 -0.2 142,034 - GFF4773 0.44 -1.3 142,034 - GFF4773 0.44 -0.0 142,353 - GFF4773 0.85 -0.7 142,388 - GFF4773 0.90 +0.3 142,388 - GFF4773 0.90 -0.7 142,426 + +2.3 142,427 - +0.0 142,427 - -0.4 142,427 - +0.4 142,427 - +0.4 142,823 + GFF4774 0.50 +0.2 142,823 + GFF4774 0.50 -0.3 142,823 + GFF4774 0.50 -1.7 142,823 + GFF4774 0.50 -0.6 142,823 + GFF4774 0.50 -0.2 142,824 - GFF4774 0.50 -1.6 142,824 - GFF4774 0.50 -0.0 142,824 - GFF4774 0.50 -1.0 142,824 - GFF4774 0.50 -0.4 142,824 - GFF4774 0.50 -1.5 142,824 - GFF4774 0.50 -0.7 142,824 - GFF4774 0.50 +1.3 143,024 + GFF4774 0.78 -0.4 143,024 + GFF4774 0.78 -1.9 143,024 + GFF4774 0.78 -0.1 143,024 + GFF4774 0.78 -1.2 143,025 - GFF4774 0.79 +1.3 143,025 - GFF4774 0.79 -1.3 143,085 - GFF4774 0.87 -0.5 143,358 + +0.4 143,358 + +0.2 143,359 - -0.4
Or see this region's nucleotide sequence