Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4570 and GFF4571 are separated by 12 nucleotides GFF4571 and GFF4572 overlap by 4 nucleotides GFF4572 and GFF4573 are separated by 61 nucleotides
GFF4570 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 207,887 to 209,095
GFF4570
GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250
GFF4571
GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074
GFF4572
GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344
GFF4573
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 208.196 kb on + strand, within GFF4570 at 208.196 kb on + strand, within GFF4570 at 208.197 kb on - strand, within GFF4570 at 208.269 kb on - strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.349 kb on + strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.350 kb on - strand, within GFF4570 at 208.507 kb on + strand, within GFF4570 at 208.507 kb on + strand, within GFF4570 at 208.508 kb on - strand, within GFF4570 at 208.613 kb on + strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.614 kb on - strand, within GFF4570 at 208.625 kb on + strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.626 kb on - strand, within GFF4570 at 208.919 kb on + strand, within GFF4570 at 208.919 kb on + strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.920 kb on - strand, within GFF4570 at 208.958 kb on + strand, within GFF4570 at 208.958 kb on + strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.959 kb on - strand, within GFF4570 at 208.985 kb on + strand at 208.985 kb on + strand at 208.986 kb on - strand at 208.986 kb on - strand at 209.094 kb on - strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.177 kb on + strand at 209.178 kb on - strand at 209.495 kb on + strand, within GFF4571 at 209.496 kb on - strand, within GFF4571 at 209.572 kb on - strand, within GFF4571 at 209.885 kb on + strand, within GFF4571 at 209.886 kb on - strand, within GFF4571 at 210.155 kb on + strand at 210.155 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.352 kb on + strand, within GFF4572 at 210.352 kb on + strand, within GFF4572 at 210.353 kb on - strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.661 kb on + strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 208,196 + GFF4570 0.26 +0.5 208,196 + GFF4570 0.26 +0.4 208,197 - GFF4570 0.26 +0.1 208,269 - GFF4570 0.32 +1.1 208,349 + GFF4570 0.38 +0.3 208,349 + GFF4570 0.38 +0.2 208,349 + GFF4570 0.38 -0.6 208,350 - GFF4570 0.38 +0.4 208,350 - GFF4570 0.38 -0.8 208,350 - GFF4570 0.38 -0.2 208,350 - GFF4570 0.38 +0.6 208,350 - GFF4570 0.38 -0.6 208,350 - GFF4570 0.38 -1.8 208,350 - GFF4570 0.38 -0.4 208,350 - GFF4570 0.38 +0.1 208,507 + GFF4570 0.51 -0.5 208,507 + GFF4570 0.51 -1.3 208,508 - GFF4570 0.51 -0.1 208,613 + GFF4570 0.60 -0.5 208,614 - GFF4570 0.60 -1.6 208,614 - GFF4570 0.60 -0.0 208,614 - GFF4570 0.60 -0.2 208,625 + GFF4570 0.61 +0.7 208,626 - GFF4570 0.61 -0.1 208,626 - GFF4570 0.61 -0.7 208,626 - GFF4570 0.61 -0.5 208,919 + GFF4570 0.85 +0.0 208,919 + GFF4570 0.85 -0.7 208,920 - GFF4570 0.85 +0.3 208,920 - GFF4570 0.85 +0.6 208,920 - GFF4570 0.85 +0.3 208,958 + GFF4570 0.89 -0.3 208,958 + GFF4570 0.89 -0.9 208,959 - GFF4570 0.89 +0.2 208,959 - GFF4570 0.89 -1.6 208,959 - GFF4570 0.89 -0.1 208,959 - GFF4570 0.89 -1.2 208,959 - GFF4570 0.89 -0.2 208,985 + +0.5 208,985 + +0.3 208,986 - +0.1 208,986 - -0.2 209,094 - -0.2 209,177 + -0.2 209,177 + +0.1 209,177 + -0.2 209,177 + -0.7 209,177 + +0.5 209,178 - +0.0 209,495 + GFF4571 0.34 -0.6 209,496 - GFF4571 0.34 -0.7 209,572 - GFF4571 0.41 -1.6 209,885 + GFF4571 0.68 -0.5 209,886 - GFF4571 0.68 -0.7 210,155 + -0.3 210,155 + +0.2 210,218 + +0.0 210,218 + -0.1 210,218 + -0.3 210,219 - -0.2 210,219 - +0.7 210,219 - -1.7 210,219 - -0.8 210,352 + GFF4572 0.13 -0.7 210,352 + GFF4572 0.13 +0.6 210,353 - GFF4572 0.13 +0.1 210,649 + GFF4572 0.49 -3.1 210,649 + GFF4572 0.49 -0.4 210,650 - GFF4572 0.49 -0.7 210,650 - GFF4572 0.49 -0.2 210,650 - GFF4572 0.49 +0.7 210,650 - GFF4572 0.49 +1.7 210,661 + GFF4572 0.50 +0.0 210,662 - GFF4572 0.50 -0.7 210,662 - GFF4572 0.50 +1.7 210,662 - GFF4572 0.50 -0.0 210,662 - GFF4572 0.50 +1.1
Or see this region's nucleotide sequence