Strain Fitness in Variovorax sp. SCN45 around GFF4554

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4553 and GFF4554 are separated by 62 nucleotidesGFF4554 and GFF4555 are separated by 103 nucleotidesGFF4555 and GFF4556 overlap by 4 nucleotides GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032 GFF4553 GFF4554 - Protease HtpX, at 191,095 to 191,970 GFF4554 GFF4555 - Putative transmembrane protein, at 192,074 to 192,829 GFF4555 GFF4556 - hypothetical protein, at 192,826 to 193,626 GFF4556 Position (kb) 191 192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.359 kb on - strand, within GFF4553at 190.406 kb on + strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.493 kb on + strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 191.073 kb on + strandat 191.073 kb on + strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.086 kb on + strandat 191.086 kb on + strandat 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.381 kb on + strand, within GFF4554at 191.382 kb on - strand, within GFF4554at 191.382 kb on - strand, within GFF4554at 191.441 kb on + strand, within GFF4554at 191.442 kb on - strand, within GFF4554at 191.442 kb on - strand, within GFF4554at 191.961 kb on + strandat 191.961 kb on + strandat 191.961 kb on + strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.006 kb on - strandat 192.006 kb on - strandat 192.006 kb on - strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.060 kb on + strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.061 kb on - strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.066 kb on + strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.067 kb on - strandat 192.075 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.129 kb on + strandat 192.129 kb on + strandat 192.129 kb on + strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.651 kb on + strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.652 kb on - strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.695 kb on + strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555at 192.696 kb on - strand, within GFF4555

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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190,358 + GFF4553 0.32 +0.4
190,358 + GFF4553 0.32 +0.3
190,358 + GFF4553 0.32 +0.4
190,359 - GFF4553 0.32 +0.5
190,406 + GFF4553 0.37 -0.3
190,407 - GFF4553 0.37 +0.3
190,407 - GFF4553 0.37 -0.1
190,407 - GFF4553 0.37 -0.2
190,407 - GFF4553 0.37 -0.4
190,493 + GFF4553 0.45 +0.7
190,494 - GFF4553 0.46 -0.6
190,494 - GFF4553 0.46 +0.2
190,700 + GFF4553 0.66 -0.8
190,700 + GFF4553 0.66 +1.0
190,700 + GFF4553 0.66 -0.4
190,700 + GFF4553 0.66 -0.3
190,700 + GFF4553 0.66 -0.3
190,700 + GFF4553 0.66 -0.3
190,700 + GFF4553 0.66 +0.4
190,700 + GFF4553 0.66 -1.1
190,700 + GFF4553 0.66 +1.2
190,701 - GFF4553 0.66 +0.3
190,701 - GFF4553 0.66 +0.9
190,701 - GFF4553 0.66 +0.1
190,701 - GFF4553 0.66 -1.0
190,701 - GFF4553 0.66 -1.7
190,701 - GFF4553 0.66 -1.8
190,701 - GFF4553 0.66 -0.7
190,701 - GFF4553 0.66 -0.0
190,701 - GFF4553 0.66 +0.4
190,850 + GFF4553 0.82 -0.2
190,850 + GFF4553 0.82 -1.1
190,850 + GFF4553 0.82 -0.1
190,850 + GFF4553 0.82 +1.0
190,850 + GFF4553 0.82 -0.4
190,850 + GFF4553 0.82 -0.8
190,850 + GFF4553 0.82 -1.8
190,850 + GFF4553 0.82 -0.4
190,850 + GFF4553 0.82 -0.6
190,850 + GFF4553 0.82 +0.7
190,850 + GFF4553 0.82 +0.4
190,850 + GFF4553 0.82 +0.7
190,850 + GFF4553 0.82 -0.4
190,850 + GFF4553 0.82 -0.3
190,850 + GFF4553 0.82 -1.1
190,850 + GFF4553 0.82 -0.9
190,850 + GFF4553 0.82 -0.3
190,850 + GFF4553 0.82 +0.1
190,850 + GFF4553 0.82 +0.7
190,850 + GFF4553 0.82 -0.0
190,850 + GFF4553 0.82 +0.1
190,850 + GFF4553 0.82 -1.0
190,850 + GFF4553 0.82 -1.5
190,850 + GFF4553 0.82 -0.5
190,850 + GFF4553 0.82 -0.8
190,850 + GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 -1.0
190,851 - GFF4553 0.82 +0.3
190,851 - GFF4553 0.82 -0.7
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 -1.7
190,851 - GFF4553 0.82 -0.2
190,851 - GFF4553 0.82 -0.6
190,851 - GFF4553 0.82 -0.8
190,851 - GFF4553 0.82 +0.3
190,851 - GFF4553 0.82 -1.2
190,851 - GFF4553 0.82 +0.4
190,851 - GFF4553 0.82 -0.2
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 +0.9
190,851 - GFF4553 0.82 -1.3
190,851 - GFF4553 0.82 -0.8
190,851 - GFF4553 0.82 +0.3
190,851 - GFF4553 0.82 -0.1
190,851 - GFF4553 0.82 +1.0
190,851 - GFF4553 0.82 -0.7
190,851 - GFF4553 0.82 +0.0
190,851 - GFF4553 0.82 +0.5
190,851 - GFF4553 0.82 -0.5
190,851 - GFF4553 0.82 +0.7
190,851 - GFF4553 0.82 -0.7
190,851 - GFF4553 0.82 +0.3
190,851 - GFF4553 0.82 -0.3
190,851 - GFF4553 0.82 +1.0
190,851 - GFF4553 0.82 -0.8
190,851 - GFF4553 0.82 +0.3
191,073 + -0.7
191,073 + -1.1
191,074 - +1.2
191,074 - -1.1
191,074 - -0.7
191,074 - +1.0
191,086 + -0.3
191,086 + -0.2
191,378 + GFF4554 0.32 -0.3
191,378 + GFF4554 0.32 -0.2
191,378 + GFF4554 0.32 +1.3
191,378 + GFF4554 0.32 -0.2
191,378 + GFF4554 0.32 +0.9
191,378 + GFF4554 0.32 -1.5
191,378 + GFF4554 0.32 -1.3
191,378 + GFF4554 0.32 -0.8
191,378 + GFF4554 0.32 -0.7
191,378 + GFF4554 0.32 +1.1
191,378 + GFF4554 0.32 -1.6
191,378 + GFF4554 0.32 +0.0
191,378 + GFF4554 0.32 +0.3
191,379 - GFF4554 0.32 -0.1
191,379 - GFF4554 0.32 +0.3
191,379 - GFF4554 0.32 +0.8
191,379 - GFF4554 0.32 +0.6
191,379 - GFF4554 0.32 -1.1
191,379 - GFF4554 0.32 +0.3
191,379 - GFF4554 0.32 -0.1
191,379 - GFF4554 0.32 +1.0
191,379 - GFF4554 0.32 -0.3
191,379 - GFF4554 0.32 -0.2
191,381 + GFF4554 0.33 -0.1
191,382 - GFF4554 0.33 -0.4
191,382 - GFF4554 0.33 -1.0
191,441 + GFF4554 0.39 -0.7
191,442 - GFF4554 0.40 -1.1
191,442 - GFF4554 0.40 -0.7
191,961 + -0.3
191,961 + -0.6
191,961 + +0.0
191,962 - -0.4
191,962 - -0.3
191,962 - -0.7
191,962 - -0.0
191,962 - -0.2
192,005 + -0.4
192,005 + -0.9
192,005 + -1.2
192,006 - -1.0
192,006 - -0.4
192,006 - -0.4
192,060 + -0.5
192,060 + +3.0
192,060 + -0.9
192,060 + -1.4
192,060 + +0.4
192,060 + +0.1
192,061 - -1.9
192,061 - -0.7
192,061 - +0.5
192,061 - -0.1
192,061 - -0.4
192,061 - +1.7
192,061 - -0.4
192,061 - -0.3
192,066 + -1.3
192,066 + -1.1
192,066 + +0.7
192,066 + -0.1
192,067 - +0.3
192,067 - -0.1
192,067 - +1.7
192,067 - -0.2
192,067 - -1.3
192,067 - +1.7
192,075 + -0.1
192,086 + -0.3
192,086 + -1.1
192,087 - +1.1
192,087 - -0.1
192,129 + -0.9
192,129 + -0.5
192,129 + -0.5
192,130 - -0.1
192,130 - +0.2
192,130 - +2.0
192,651 + GFF4555 0.76 +0.1
192,652 - GFF4555 0.76 -0.1
192,652 - GFF4555 0.76 -1.4
192,652 - GFF4555 0.76 +0.9
192,695 + GFF4555 0.82 +0.0
192,695 + GFF4555 0.82 -0.5
192,696 - GFF4555 0.82 -0.9
192,696 - GFF4555 0.82 -0.4
192,696 - GFF4555 0.82 +0.1
192,696 - GFF4555 0.82 -1.3

Or see this region's nucleotide sequence