Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4436 and GFF4437 are separated by 196 nucleotides GFF4437 and GFF4438 are separated by 84 nucleotides GFF4438 and GFF4439 are separated by 57 nucleotides
GFF4436 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 75,834 to 77,015
GFF4436
GFF4437 - Low-complexity acidic protein, XCC2875 type, at 77,212 to 77,757
GFF4437
GFF4438 - Sugar kinases, ribokinase family, at 77,842 to 78,744
GFF4438
GFF4439 - Probable transmembrane protein, at 78,802 to 80,199
GFF4439
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 77.032 kb on + strand at 77.032 kb on + strand at 77.032 kb on + strand at 77.032 kb on + strand at 77.032 kb on + strand at 77.032 kb on + strand at 77.032 kb on + strand at 77.033 kb on - strand at 77.033 kb on - strand at 77.033 kb on - strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.174 kb on + strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.175 kb on - strand at 77.207 kb on + strand at 77.207 kb on + strand at 77.207 kb on + strand at 77.208 kb on - strand at 77.208 kb on - strand at 77.208 kb on - strand at 77.238 kb on + strand at 77.239 kb on - strand at 77.286 kb on + strand, within GFF4437 at 77.286 kb on + strand, within GFF4437 at 77.286 kb on + strand, within GFF4437 at 77.286 kb on + strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.287 kb on - strand, within GFF4437 at 77.309 kb on + strand, within GFF4437 at 77.354 kb on + strand, within GFF4437 at 77.355 kb on - strand, within GFF4437 at 77.355 kb on - strand, within GFF4437 at 77.384 kb on + strand, within GFF4437 at 77.384 kb on + strand, within GFF4437 at 77.384 kb on + strand, within GFF4437 at 77.385 kb on + strand, within GFF4437 at 77.385 kb on - strand, within GFF4437 at 77.385 kb on - strand, within GFF4437 at 77.385 kb on - strand, within GFF4437 at 77.385 kb on - strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.675 kb on + strand, within GFF4437 at 77.676 kb on - strand, within GFF4437 at 77.816 kb on + strand at 77.817 kb on - strand at 77.817 kb on - strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.873 kb on + strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.874 kb on - strand at 77.951 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.167 kb on + strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.168 kb on - strand, within GFF4438 at 78.515 kb on + strand, within GFF4438 at 78.516 kb on - strand, within GFF4438 at 78.516 kb on - strand, within GFF4438 at 78.581 kb on + strand, within GFF4438 at 78.581 kb on + strand, within GFF4438 at 78.581 kb on + strand, within GFF4438 at 78.581 kb on + strand, within GFF4438 at 78.581 kb on + strand, within GFF4438 at 78.582 kb on - strand, within GFF4438 at 78.582 kb on - strand, within GFF4438 at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.733 kb on + strand at 78.734 kb on - strand at 78.734 kb on - strand at 78.734 kb on - strand at 78.734 kb on - strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.809 kb on + strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.810 kb on - strand at 78.930 kb on - strand at 78.930 kb on - strand at 78.930 kb on - strand at 78.930 kb on - strand at 78.930 kb on - strand at 78.930 kb on - strand at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.145 kb on + strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439 at 79.146 kb on - strand, within GFF4439
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 77,032 + +0.3 77,032 + -0.0 77,032 + +0.5 77,032 + -0.2 77,032 + -0.8 77,032 + +0.3 77,032 + +0.1 77,033 - +0.4 77,033 - +1.1 77,033 - +0.1 77,174 + -0.1 77,174 + +0.6 77,174 + -1.2 77,174 + -1.1 77,174 + -0.9 77,174 + -0.6 77,174 + -0.6 77,174 + +0.4 77,174 + +0.2 77,174 + +1.1 77,174 + -1.0 77,174 + -0.3 77,175 - +0.1 77,175 - -1.8 77,175 - -0.3 77,175 - +0.1 77,175 - +0.3 77,175 - -1.4 77,175 - +0.1 77,175 - -0.6 77,175 - +0.5 77,175 - -1.5 77,207 + -0.7 77,207 + -0.1 77,207 + -2.7 77,208 - -0.3 77,208 - +0.4 77,208 - +0.2 77,238 + -2.7 77,239 - +0.1 77,286 + GFF4437 0.14 +0.7 77,286 + GFF4437 0.14 +1.3 77,286 + GFF4437 0.14 -1.7 77,286 + GFF4437 0.14 -0.8 77,287 - GFF4437 0.14 -1.9 77,287 - GFF4437 0.14 -0.4 77,287 - GFF4437 0.14 +0.8 77,287 - GFF4437 0.14 -0.0 77,287 - GFF4437 0.14 -0.3 77,287 - GFF4437 0.14 -0.4 77,287 - GFF4437 0.14 +0.3 77,287 - GFF4437 0.14 +0.9 77,287 - GFF4437 0.14 +0.6 77,309 + GFF4437 0.18 +0.7 77,354 + GFF4437 0.26 -0.3 77,355 - GFF4437 0.26 +0.4 77,355 - GFF4437 0.26 +0.5 77,384 + GFF4437 0.32 -0.1 77,384 + GFF4437 0.32 -0.8 77,384 + GFF4437 0.32 -1.1 77,385 + GFF4437 0.32 -0.8 77,385 - GFF4437 0.32 +3.7 77,385 - GFF4437 0.32 +1.7 77,385 - GFF4437 0.32 -0.1 77,385 - GFF4437 0.32 +0.1 77,675 + GFF4437 0.85 -0.3 77,675 + GFF4437 0.85 +0.1 77,675 + GFF4437 0.85 +0.1 77,675 + GFF4437 0.85 +0.3 77,675 + GFF4437 0.85 +0.1 77,675 + GFF4437 0.85 -1.4 77,675 + GFF4437 0.85 +0.4 77,675 + GFF4437 0.85 -0.5 77,675 + GFF4437 0.85 -1.3 77,675 + GFF4437 0.85 +0.3 77,676 - GFF4437 0.85 +0.7 77,816 + -0.3 77,817 - +0.2 77,817 - -0.4 77,873 + -0.0 77,873 + +0.3 77,873 + -0.2 77,873 + -0.7 77,873 + -0.9 77,873 + +0.3 77,873 + +0.1 77,873 + -0.1 77,873 + -2.0 77,873 + +1.7 77,874 - -0.1 77,874 - +0.2 77,874 - -0.1 77,874 - +0.4 77,874 - +0.7 77,874 - -0.7 77,874 - -0.5 77,874 - +1.3 77,951 + GFF4438 0.12 -1.1 78,167 + GFF4438 0.36 -0.6 78,167 + GFF4438 0.36 +0.7 78,167 + GFF4438 0.36 -0.1 78,167 + GFF4438 0.36 -0.7 78,167 + GFF4438 0.36 -0.7 78,167 + GFF4438 0.36 -1.7 78,167 + GFF4438 0.36 -0.0 78,167 + GFF4438 0.36 -0.7 78,168 - GFF4438 0.36 -0.3 78,168 - GFF4438 0.36 -0.7 78,168 - GFF4438 0.36 +0.9 78,168 - GFF4438 0.36 +1.7 78,168 - GFF4438 0.36 +0.7 78,168 - GFF4438 0.36 -0.7 78,515 + GFF4438 0.75 -1.5 78,516 - GFF4438 0.75 -0.3 78,516 - GFF4438 0.75 +0.7 78,581 + GFF4438 0.82 +1.1 78,581 + GFF4438 0.82 -0.3 78,581 + GFF4438 0.82 -0.1 78,581 + GFF4438 0.82 +3.3 78,581 + GFF4438 0.82 -0.3 78,582 - GFF4438 0.82 -0.3 78,582 - GFF4438 0.82 +0.1 78,733 + -1.1 78,733 + +0.3 78,733 + +0.7 78,733 + +0.5 78,733 + +0.9 78,733 + -0.7 78,733 + -0.3 78,733 + +1.7 78,734 - +0.7 78,734 - -1.1 78,734 - +0.1 78,734 - -1.5 78,809 + +0.1 78,809 + +0.8 78,809 + -0.7 78,809 + -0.2 78,809 + -0.9 78,809 + -0.6 78,809 + -1.0 78,809 + -0.2 78,809 + -2.1 78,809 + -0.8 78,809 + +0.1 78,809 + -0.2 78,809 + -0.4 78,809 + -2.7 78,809 + -0.2 78,810 - -0.3 78,810 - +0.3 78,810 - -1.4 78,810 - +0.0 78,810 - -0.4 78,810 - -0.1 78,810 - +0.4 78,810 - -0.6 78,810 - +0.1 78,810 - -0.5 78,810 - -0.1 78,810 - +1.0 78,930 - -0.6 78,930 - -0.2 78,930 - -0.6 78,930 - -1.1 78,930 - +0.4 78,930 - -0.2 79,145 + GFF4439 0.25 +0.7 79,145 + GFF4439 0.25 -0.6 79,145 + GFF4439 0.25 -2.7 79,145 + GFF4439 0.25 -1.1 79,145 + GFF4439 0.25 -0.5 79,145 + GFF4439 0.25 -0.5 79,145 + GFF4439 0.25 -1.4 79,145 + GFF4439 0.25 -0.5 79,145 + GFF4439 0.25 -0.7 79,145 + GFF4439 0.25 -0.4 79,145 + GFF4439 0.25 +0.4 79,145 + GFF4439 0.25 -0.2 79,146 - GFF4439 0.25 +0.4 79,146 - GFF4439 0.25 -0.3 79,146 - GFF4439 0.25 -0.2 79,146 - GFF4439 0.25 -1.9 79,146 - GFF4439 0.25 -0.8 79,146 - GFF4439 0.25 -2.5 79,146 - GFF4439 0.25 -0.3 79,146 - GFF4439 0.25 -0.6 79,146 - GFF4439 0.25 +0.9 79,146 - GFF4439 0.25 -0.4 79,146 - GFF4439 0.25 +0.9 79,146 - GFF4439 0.25 +0.2 79,146 - GFF4439 0.25 -1.1 79,146 - GFF4439 0.25 -0.1 79,146 - GFF4439 0.25 -0.3 79,146 - GFF4439 0.25 -0.4
Or see this region's nucleotide sequence