Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4364 and GFF4365 are separated by 81 nucleotides GFF4365 and GFF4366 overlap by 4 nucleotides GFF4366 and GFF4367 are separated by 7 nucleotides
GFF4364 - Transcriptional regulator, LysR family, at 286,783 to 287,706
GFF4364
GFF4365 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 287,788 to 289,794
GFF4365
GFF4366 - BUG/TctC family periplasmic protein, at 289,791 to 290,777
GFF4366
GFF4367 - KEGG: regulator of ribonuclease activity A, at 290,785 to 291,270
GFF4367
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.259 kb on - strand, within GFF4364 at 287.330 kb on + strand, within GFF4364 at 287.330 kb on + strand, within GFF4364 at 287.989 kb on + strand, within GFF4365 at 288.502 kb on + strand, within GFF4365 at 288.503 kb on - strand, within GFF4365 at 288.503 kb on - strand, within GFF4365 at 288.605 kb on - strand, within GFF4365 at 288.793 kb on + strand, within GFF4365 at 288.793 kb on + strand, within GFF4365 at 290.115 kb on + strand, within GFF4366 at 290.115 kb on + strand, within GFF4366 at 290.116 kb on - strand, within GFF4366 at 290.238 kb on + strand, within GFF4366 at 290.268 kb on + strand, within GFF4366 at 290.269 kb on - strand, within GFF4366 at 290.498 kb on - strand, within GFF4366 at 290.541 kb on + strand, within GFF4366
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 287,259 - GFF4364 0.52 +0.3 287,330 + GFF4364 0.59 +0.2 287,330 + GFF4364 0.59 -0.1 287,989 + GFF4365 0.10 +0.2 288,502 + GFF4365 0.36 -1.0 288,503 - GFF4365 0.36 -1.2 288,503 - GFF4365 0.36 -0.2 288,605 - GFF4365 0.41 -0.2 288,793 + GFF4365 0.50 -0.7 288,793 + GFF4365 0.50 +2.2 290,115 + GFF4366 0.33 +1.4 290,115 + GFF4366 0.33 -0.4 290,116 - GFF4366 0.33 -0.4 290,238 + GFF4366 0.45 +0.6 290,268 + GFF4366 0.48 -1.9 290,269 - GFF4366 0.48 +0.1 290,498 - GFF4366 0.72 -1.1 290,541 + GFF4366 0.76 -1.0
Or see this region's nucleotide sequence