Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4301 and GFF4302 are separated by 42 nucleotides GFF4302 and GFF4303 are separated by 145 nucleotides GFF4303 and GFF4304 are separated by 149 nucleotides
GFF4301 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 220,831 to 221,745
GFF4301
GFF4302 - hypothetical protein AF1210, at 221,788 to 222,720
GFF4302
GFF4303 - Transcriptional regulator, MarR family, at 222,866 to 223,330
GFF4303
GFF4304 - Cyclohexanecarboxylate--CoA ligase, at 223,480 to 225,141
GFF4304
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.270 kb on - strand, within GFF4301 at 221.594 kb on - strand, within GFF4301 at 222.059 kb on - strand, within GFF4302 at 222.238 kb on + strand, within GFF4302 at 222.305 kb on - strand, within GFF4302 at 222.322 kb on + strand, within GFF4302 at 222.322 kb on + strand, within GFF4302 at 222.810 kb on - strand at 222.817 kb on - strand at 222.817 kb on - strand at 222.817 kb on - strand at 223.307 kb on + strand at 223.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 221,270 - GFF4301 0.48 +0.5 221,594 - GFF4301 0.83 -0.3 222,059 - GFF4302 0.29 -0.8 222,238 + GFF4302 0.48 +1.2 222,305 - GFF4302 0.55 -0.6 222,322 + GFF4302 0.57 -2.8 222,322 + GFF4302 0.57 -0.2 222,810 - +2.6 222,817 - -0.4 222,817 - -0.0 222,817 - +0.2 223,307 + -0.5 223,537 + -1.2
Or see this region's nucleotide sequence