Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4256 and GFF4257 are separated by 16 nucleotides GFF4257 and GFF4258 overlap by 8 nucleotides GFF4258 and GFF4259 are separated by 34 nucleotides
GFF4256 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 171,515 to 172,588
GFF4256
GFF4257 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 172,605 to 173,741
GFF4257
GFF4258 - no description, at 173,734 to 174,105
GFF4258
GFF4259 - Transcriptional regulator, DeoR family, at 174,140 to 174,862
GFF4259
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 171.615 kb on - strand at 171.720 kb on - strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.917 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.995 kb on + strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 171.996 kb on - strand, within GFF4256 at 172.092 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.304 kb on + strand, within GFF4256 at 172.364 kb on + strand, within GFF4256 at 172.365 kb on - strand, within GFF4256 at 173.310 kb on + strand, within GFF4257 at 173.310 kb on + strand, within GFF4257 at 173.311 kb on - strand, within GFF4257 at 173.319 kb on + strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.320 kb on - strand, within GFF4257 at 173.453 kb on - strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.490 kb on + strand, within GFF4257 at 173.491 kb on - strand, within GFF4257 at 173.739 kb on + strand at 173.739 kb on + strand at 173.740 kb on - strand at 173.740 kb on - strand at 173.861 kb on + strand, within GFF4258 at 173.861 kb on + strand, within GFF4258 at 174.047 kb on + strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.048 kb on - strand, within GFF4258 at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.170 kb on + strand at 174.170 kb on + strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.171 kb on - strand at 174.400 kb on - strand, within GFF4259 at 174.687 kb on + strand, within GFF4259 at 174.688 kb on - strand, within GFF4259
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 171,615 - +0.0 171,720 - GFF4256 0.19 -1.4 171,917 + GFF4256 0.37 +0.4 171,917 + GFF4256 0.37 +0.2 171,995 + GFF4256 0.45 -0.4 171,995 + GFF4256 0.45 -0.5 171,995 + GFF4256 0.45 -0.7 171,996 - GFF4256 0.45 +0.3 171,996 - GFF4256 0.45 -2.8 171,996 - GFF4256 0.45 -0.9 172,092 + GFF4256 0.54 +0.5 172,304 + GFF4256 0.73 -1.6 172,304 + GFF4256 0.73 -0.6 172,364 + GFF4256 0.79 +0.0 172,365 - GFF4256 0.79 +0.9 173,310 + GFF4257 0.62 +0.2 173,310 + GFF4257 0.62 -0.4 173,311 - GFF4257 0.62 +0.7 173,319 + GFF4257 0.63 -0.1 173,320 - GFF4257 0.63 -1.2 173,320 - GFF4257 0.63 -0.5 173,453 - GFF4257 0.75 +0.1 173,490 + GFF4257 0.78 +0.8 173,490 + GFF4257 0.78 -0.0 173,491 - GFF4257 0.78 +0.1 173,739 + -0.0 173,739 + -1.8 173,740 - -0.0 173,740 - -0.5 173,861 + GFF4258 0.34 +0.3 173,861 + GFF4258 0.34 -1.1 174,047 + GFF4258 0.84 -0.7 174,048 - GFF4258 0.84 +1.0 174,048 - GFF4258 0.84 -2.5 174,048 - GFF4258 0.84 -0.5 174,141 + +0.1 174,141 + -0.2 174,141 + -0.1 174,141 + +0.2 174,141 + -0.7 174,141 + +0.1 174,141 + -0.0 174,141 + -0.8 174,141 + -0.4 174,142 - -0.0 174,142 - -0.8 174,142 - -0.3 174,170 + -0.5 174,170 + -0.6 174,171 - -0.8 174,171 - -0.2 174,171 - -2.7 174,400 - GFF4259 0.36 -0.3 174,687 + GFF4259 0.76 +0.1 174,688 - GFF4259 0.76 +0.2
Or see this region's nucleotide sequence