Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4124 and GFF4125 are separated by 407 nucleotides GFF4125 and GFF4126 are separated by 184 nucleotides
GFF4124 - no description, at 27,388 to 27,582
GFF4124
GFF4125 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 27,990 to 29,465
GFF4125
GFF4126 - hypothetical protein, at 29,650 to 30,534
GFF4126
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.036 kb on + strand at 27.037 kb on - strand at 27.037 kb on - strand at 27.040 kb on + strand at 27.040 kb on + strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.041 kb on - strand at 27.131 kb on + strand at 27.131 kb on + strand at 27.365 kb on + strand at 27.365 kb on + strand at 27.365 kb on + strand at 27.366 kb on - strand at 27.487 kb on - strand, within GFF4124 at 27.487 kb on - strand, within GFF4124 at 27.487 kb on - strand, within GFF4124 at 27.496 kb on + strand, within GFF4124 at 27.496 kb on + strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.497 kb on - strand, within GFF4124 at 27.542 kb on + strand, within GFF4124 at 27.543 kb on - strand, within GFF4124 at 27.563 kb on + strand at 27.563 kb on + strand at 27.563 kb on + strand at 27.564 kb on - strand at 27.598 kb on - strand at 27.636 kb on + strand at 27.640 kb on - strand at 27.676 kb on + strand at 27.680 kb on + strand at 27.684 kb on + strand at 27.713 kb on + strand at 27.770 kb on + strand at 27.771 kb on - strand at 27.857 kb on - strand at 27.857 kb on - strand at 27.857 kb on - strand at 27.860 kb on + strand at 27.860 kb on + strand at 27.860 kb on + strand at 27.860 kb on + strand at 27.939 kb on + strand at 27.939 kb on + strand at 27.939 kb on + strand at 27.940 kb on - strand at 27.940 kb on - strand at 27.972 kb on + strand at 27.999 kb on + strand at 28.049 kb on - strand at 28.049 kb on - strand at 28.100 kb on + strand at 28.101 kb on - strand at 28.129 kb on - strand at 28.129 kb on - strand at 28.129 kb on - strand at 28.131 kb on + strand at 28.132 kb on - strand at 28.179 kb on + strand, within GFF4125 at 28.444 kb on + strand, within GFF4125 at 28.599 kb on + strand, within GFF4125 at 28.599 kb on + strand, within GFF4125 at 28.599 kb on + strand, within GFF4125 at 28.600 kb on - strand, within GFF4125 at 28.665 kb on - strand, within GFF4125 at 28.837 kb on + strand, within GFF4125 at 28.837 kb on + strand, within GFF4125 at 28.837 kb on + strand, within GFF4125 at 28.837 kb on + strand, within GFF4125 at 28.837 kb on + strand, within GFF4125 at 28.839 kb on + strand, within GFF4125 at 29.047 kb on + strand, within GFF4125 at 29.055 kb on + strand, within GFF4125 at 29.056 kb on - strand, within GFF4125 at 29.138 kb on + strand, within GFF4125 at 29.148 kb on + strand, within GFF4125 at 29.263 kb on + strand, within GFF4125 at 29.304 kb on + strand, within GFF4125 at 29.384 kb on - strand at 29.454 kb on - strand at 29.520 kb on - strand at 29.799 kb on - strand, within GFF4126
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 27,036 + +1.6 27,037 - -0.7 27,037 - -0.2 27,040 + +0.7 27,040 + -0.8 27,041 - -0.8 27,041 - +0.9 27,041 - -0.0 27,041 - +0.2 27,041 - +1.3 27,131 + -1.7 27,131 + -0.0 27,365 + -0.6 27,365 + +0.6 27,365 + -1.3 27,366 - +0.4 27,487 - GFF4124 0.51 -1.6 27,487 - GFF4124 0.51 +0.7 27,487 - GFF4124 0.51 -1.1 27,496 + GFF4124 0.55 -0.2 27,496 + GFF4124 0.55 +0.8 27,497 - GFF4124 0.56 +0.6 27,497 - GFF4124 0.56 -0.2 27,497 - GFF4124 0.56 -0.6 27,542 + GFF4124 0.79 -0.4 27,543 - GFF4124 0.79 -0.5 27,563 + +0.6 27,563 + +1.6 27,563 + -0.2 27,564 - -0.2 27,598 - -0.1 27,636 + +0.3 27,640 - +0.9 27,676 + -0.6 27,680 + +0.2 27,684 + -1.1 27,713 + -0.7 27,770 + -1.6 27,771 - -1.3 27,857 - -0.2 27,857 - +0.9 27,857 - +1.6 27,860 + +0.3 27,860 + -0.8 27,860 + +0.2 27,860 + -0.7 27,939 + -0.9 27,939 + -0.2 27,939 + +0.6 27,940 - -0.7 27,940 - -1.2 27,972 + -0.8 27,999 + +0.8 28,049 - +0.0 28,049 - -0.5 28,100 + +2.0 28,101 - +0.5 28,129 - +0.2 28,129 - -1.0 28,129 - -0.8 28,131 + +0.4 28,132 - -0.9 28,179 + GFF4125 0.13 +0.3 28,444 + GFF4125 0.31 -0.4 28,599 + GFF4125 0.41 +1.0 28,599 + GFF4125 0.41 -0.4 28,599 + GFF4125 0.41 +0.2 28,600 - GFF4125 0.41 -0.3 28,665 - GFF4125 0.46 -1.8 28,837 + GFF4125 0.57 +0.2 28,837 + GFF4125 0.57 -0.6 28,837 + GFF4125 0.57 -0.1 28,837 + GFF4125 0.57 -0.5 28,837 + GFF4125 0.57 -0.2 28,839 + GFF4125 0.58 -0.0 29,047 + GFF4125 0.72 +0.6 29,055 + GFF4125 0.72 -0.6 29,056 - GFF4125 0.72 +0.2 29,138 + GFF4125 0.78 -0.3 29,148 + GFF4125 0.78 +0.2 29,263 + GFF4125 0.86 -0.5 29,304 + GFF4125 0.89 +0.4 29,384 - -0.1 29,454 - -0.3 29,520 - +1.1 29,799 - GFF4126 0.17 +1.4
Or see this region's nucleotide sequence