Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3941 and GFF3942 are separated by 67 nucleotides GFF3942 and GFF3943 are separated by 28 nucleotides GFF3943 and GFF3944 overlap by 4 nucleotides GFF3944 and GFF3945 are separated by 123 nucleotides
GFF3941 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 144,609 to 145,649
GFF3941
GFF3942 - DnaA inactivator Hda (shorter homolog of DnaA), at 145,717 to 146,475
GFF3942
GFF3943 - Poly(A) polymerase (EC 2.7.7.19), at 146,504 to 148,135
GFF3943
GFF3944 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 148,132 to 148,770
GFF3944
GFF3945 - Phosphate transport regulator (distant homolog of PhoU), at 148,894 to 149,538
GFF3945
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 145.618 kb on + strand at 145.618 kb on + strand at 145.619 kb on - strand at 145.619 kb on - strand at 145.690 kb on + strand at 145.690 kb on + strand at 145.690 kb on + strand at 145.691 kb on - strand at 145.691 kb on - strand at 145.691 kb on - strand at 145.751 kb on + strand at 145.751 kb on + strand at 146.473 kb on + strand at 146.473 kb on + strand at 146.474 kb on - strand at 146.486 kb on + strand at 146.486 kb on + strand at 146.486 kb on + strand at 146.486 kb on + strand at 146.486 kb on + strand at 146.487 kb on - strand at 146.487 kb on - strand at 146.487 kb on - strand at 146.487 kb on - strand at 146.681 kb on + strand, within GFF3943 at 146.682 kb on - strand, within GFF3943 at 146.882 kb on + strand, within GFF3943 at 146.882 kb on + strand, within GFF3943 at 146.882 kb on + strand, within GFF3943 at 146.883 kb on - strand, within GFF3943 at 147.053 kb on + strand, within GFF3943 at 147.053 kb on + strand, within GFF3943 at 147.053 kb on + strand, within GFF3943 at 147.054 kb on - strand, within GFF3943 at 147.054 kb on - strand, within GFF3943 at 147.054 kb on - strand, within GFF3943 at 147.054 kb on - strand, within GFF3943 at 147.057 kb on - strand, within GFF3943 at 147.057 kb on - strand, within GFF3943 at 147.057 kb on - strand, within GFF3943 at 147.057 kb on - strand, within GFF3943 at 147.087 kb on - strand, within GFF3943 at 147.384 kb on - strand, within GFF3943 at 148.820 kb on + strand at 148.820 kb on + strand at 148.820 kb on + strand at 148.820 kb on + strand at 148.821 kb on - strand at 148.821 kb on - strand at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.002 kb on + strand, within GFF3945 at 149.003 kb on - strand, within GFF3945 at 149.003 kb on - strand, within GFF3945 at 149.003 kb on - strand, within GFF3945 at 149.029 kb on + strand, within GFF3945 at 149.029 kb on + strand, within GFF3945 at 149.029 kb on + strand, within GFF3945 at 149.029 kb on + strand, within GFF3945 at 149.029 kb on + strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945 at 149.030 kb on - strand, within GFF3945
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 145,618 + -0.6 145,618 + +0.1 145,619 - -0.8 145,619 - +1.2 145,690 + -0.3 145,690 + -0.4 145,690 + -0.8 145,691 - +0.4 145,691 - +0.1 145,691 - -1.2 145,751 + +0.1 145,751 + -1.6 146,473 + +0.9 146,473 + +0.7 146,474 - -1.6 146,486 + +0.4 146,486 + -0.2 146,486 + +0.1 146,486 + +0.1 146,486 + -0.8 146,487 - -0.5 146,487 - +0.0 146,487 - +0.3 146,487 - -0.9 146,681 + GFF3943 0.11 -1.0 146,682 - GFF3943 0.11 -0.8 146,882 + GFF3943 0.23 +0.2 146,882 + GFF3943 0.23 +1.1 146,882 + GFF3943 0.23 -0.5 146,883 - GFF3943 0.23 -0.5 147,053 + GFF3943 0.34 +0.5 147,053 + GFF3943 0.34 -0.5 147,053 + GFF3943 0.34 -0.8 147,054 - GFF3943 0.34 -0.1 147,054 - GFF3943 0.34 +0.3 147,054 - GFF3943 0.34 +0.1 147,054 - GFF3943 0.34 -1.7 147,057 - GFF3943 0.34 +0.9 147,057 - GFF3943 0.34 -1.3 147,057 - GFF3943 0.34 +0.1 147,057 - GFF3943 0.34 -1.9 147,087 - GFF3943 0.36 -1.1 147,384 - GFF3943 0.54 +0.5 148,820 + -0.7 148,820 + +0.5 148,820 + -0.4 148,820 + +1.5 148,821 - -0.5 148,821 - +1.1 149,002 + GFF3945 0.17 -0.6 149,002 + GFF3945 0.17 -0.3 149,002 + GFF3945 0.17 -0.2 149,002 + GFF3945 0.17 +0.5 149,002 + GFF3945 0.17 -0.8 149,002 + GFF3945 0.17 +0.5 149,002 + GFF3945 0.17 +0.2 149,002 + GFF3945 0.17 -0.2 149,002 + GFF3945 0.17 +0.3 149,003 - GFF3945 0.17 +0.2 149,003 - GFF3945 0.17 -0.7 149,003 - GFF3945 0.17 -1.2 149,029 + GFF3945 0.21 -0.0 149,029 + GFF3945 0.21 -0.3 149,029 + GFF3945 0.21 -1.1 149,029 + GFF3945 0.21 -1.5 149,029 + GFF3945 0.21 -0.4 149,030 - GFF3945 0.21 -0.5 149,030 - GFF3945 0.21 -0.1 149,030 - GFF3945 0.21 -1.1 149,030 - GFF3945 0.21 -0.5 149,030 - GFF3945 0.21 -0.8 149,030 - GFF3945 0.21 -1.1 149,030 - GFF3945 0.21 -0.1 149,030 - GFF3945 0.21 +1.2 149,030 - GFF3945 0.21 +0.4 149,030 - GFF3945 0.21 -0.4 149,030 - GFF3945 0.21 -0.5
Or see this region's nucleotide sequence