Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3843 and GFF3844 are separated by 108 nucleotides GFF3844 and GFF3845 are separated by 47 nucleotides
GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162
GFF3843
GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137
GFF3844
GFF3845 - Ribonuclease E (EC 3.1.26.12), at 44,185 to 47,391
GFF3845
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1 at 42.294 kb on + strand, within GFF3843 at 42.294 kb on + strand, within GFF3843 at 42.294 kb on + strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.295 kb on - strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.306 kb on + strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.307 kb on - strand, within GFF3843 at 42.394 kb on - strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.519 kb on + strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.520 kb on - strand, within GFF3843 at 42.946 kb on - strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on + strand, within GFF3843 at 42.999 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.000 kb on - strand, within GFF3843 at 43.246 kb on + strand at 43.260 kb on + strand at 43.475 kb on + strand, within GFF3844 at 43.820 kb on + strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.007 kb on - strand, within GFF3844 at 44.124 kb on - strand at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.797 kb on + strand, within GFF3845 at 44.798 kb on - strand, within GFF3845 at 44.798 kb on - strand, within GFF3845 at 44.798 kb on - strand, within GFF3845 at 44.798 kb on - strand, within GFF3845 at 44.798 kb on - strand, within GFF3845
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 42,294 + GFF3843 0.45 -0.0 42,294 + GFF3843 0.45 -1.0 42,294 + GFF3843 0.45 -1.2 42,295 - GFF3843 0.45 +0.2 42,295 - GFF3843 0.45 -1.1 42,295 - GFF3843 0.45 -0.3 42,295 - GFF3843 0.45 -0.9 42,295 - GFF3843 0.45 +0.1 42,295 - GFF3843 0.45 -1.4 42,295 - GFF3843 0.45 +0.1 42,306 + GFF3843 0.45 -0.6 42,306 + GFF3843 0.45 -0.7 42,306 + GFF3843 0.45 -0.5 42,306 + GFF3843 0.45 -0.3 42,307 - GFF3843 0.45 +0.4 42,307 - GFF3843 0.45 -0.5 42,307 - GFF3843 0.45 -1.2 42,307 - GFF3843 0.45 -0.1 42,307 - GFF3843 0.45 +0.3 42,394 - GFF3843 0.51 -0.4 42,519 + GFF3843 0.59 -0.1 42,519 + GFF3843 0.59 -0.7 42,519 + GFF3843 0.59 -0.1 42,519 + GFF3843 0.59 +0.6 42,519 + GFF3843 0.59 -0.1 42,519 + GFF3843 0.59 -1.0 42,520 - GFF3843 0.59 +0.5 42,520 - GFF3843 0.59 -1.5 42,520 - GFF3843 0.59 -0.3 42,520 - GFF3843 0.59 -2.1 42,520 - GFF3843 0.59 -1.6 42,520 - GFF3843 0.59 -0.8 42,520 - GFF3843 0.59 +0.1 42,520 - GFF3843 0.59 -2.5 42,520 - GFF3843 0.59 -0.5 42,946 - GFF3843 0.86 -1.3 42,999 + GFF3843 0.90 -1.2 42,999 + GFF3843 0.90 +0.3 42,999 + GFF3843 0.90 -1.3 42,999 + GFF3843 0.90 -1.1 42,999 + GFF3843 0.90 +0.3 42,999 + GFF3843 0.90 +0.4 42,999 + GFF3843 0.90 +0.1 42,999 + GFF3843 0.90 -0.3 42,999 + GFF3843 0.90 -1.3 42,999 - GFF3843 0.90 -0.6 43,000 - GFF3843 0.90 -0.4 43,000 - GFF3843 0.90 -0.7 43,000 - GFF3843 0.90 -0.0 43,000 - GFF3843 0.90 -0.5 43,000 - GFF3843 0.90 -0.3 43,000 - GFF3843 0.90 -0.7 43,000 - GFF3843 0.90 -0.1 43,000 - GFF3843 0.90 -1.5 43,246 + -0.5 43,260 + -0.4 43,475 + GFF3844 0.24 +1.1 43,820 + GFF3844 0.63 -0.2 44,007 - GFF3844 0.85 +0.2 44,007 - GFF3844 0.85 -0.5 44,007 - GFF3844 0.85 -0.8 44,124 - -0.1 44,797 + GFF3845 0.19 -0.1 44,797 + GFF3845 0.19 -0.3 44,797 + GFF3845 0.19 +0.0 44,797 + GFF3845 0.19 -1.5 44,797 + GFF3845 0.19 +0.5 44,797 + GFF3845 0.19 +0.8 44,797 + GFF3845 0.19 -1.5 44,797 + GFF3845 0.19 -1.9 44,798 - GFF3845 0.19 +0.2 44,798 - GFF3845 0.19 -1.0 44,798 - GFF3845 0.19 +0.8 44,798 - GFF3845 0.19 +0.2 44,798 - GFF3845 0.19 +0.5
Or see this region's nucleotide sequence