Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3760 and GFF3761 are separated by 57 nucleotides GFF3761 and GFF3762 overlap by 4 nucleotides GFF3762 and GFF3763 are separated by 56 nucleotides GFF3763 and GFF3764 are separated by 6 nucleotides
GFF3760 - putative lipoprotein, at 253,186 to 253,875
GFF3760
GFF3761 - Transcriptional regulator, MarR family, at 253,933 to 254,409
GFF3761
GFF3762 - hypothetical protein, at 254,406 to 255,440
GFF3762
GFF3763 - no description, at 255,497 to 256,015
GFF3763
GFF3764 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 256,022 to 256,753
GFF3764
Position (kb) 254
255
256 Strain fitness (log2 ratio) -2
-1
0
1
2 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.408 kb on + strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.409 kb on - strand, within GFF3760 at 253.582 kb on + strand, within GFF3760 at 253.583 kb on - strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.714 kb on + strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.715 kb on - strand, within GFF3760 at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.843 kb on + strand at 253.844 kb on - strand at 253.844 kb on - strand at 253.844 kb on - strand at 253.844 kb on - strand at 254.659 kb on - strand, within GFF3762 at 254.659 kb on - strand, within GFF3762 at 254.892 kb on + strand, within GFF3762 at 254.893 kb on - strand, within GFF3762 at 255.108 kb on + strand, within GFF3762 at 255.108 kb on + strand, within GFF3762 at 255.109 kb on - strand, within GFF3762 at 255.109 kb on - strand, within GFF3762 at 255.456 kb on + strand at 255.457 kb on - strand at 255.524 kb on + strand at 255.525 kb on - strand at 255.677 kb on + strand, within GFF3763 at 255.677 kb on + strand, within GFF3763 at 255.678 kb on - strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.752 kb on + strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.753 kb on - strand, within GFF3763 at 255.770 kb on + strand, within GFF3763 at 255.770 kb on + strand, within GFF3763 at 255.770 kb on + strand, within GFF3763 at 255.771 kb on - strand, within GFF3763 at 255.771 kb on - strand, within GFF3763 at 255.771 kb on - strand, within GFF3763 at 255.771 kb on - strand, within GFF3763 at 256.040 kb on + strand at 256.040 kb on + strand at 256.040 kb on + strand at 256.040 kb on + strand at 256.041 kb on - strand at 256.041 kb on - strand at 256.041 kb on - strand at 256.041 kb on - strand at 256.041 kb on - strand at 256.112 kb on + strand, within GFF3764 at 256.112 kb on + strand, within GFF3764 at 256.112 kb on + strand, within GFF3764 at 256.113 kb on - strand, within GFF3764 at 256.211 kb on + strand, within GFF3764 at 256.212 kb on - strand, within GFF3764 at 256.212 kb on - strand, within GFF3764 at 256.212 kb on - strand, within GFF3764 at 256.212 kb on - strand, within GFF3764 at 256.212 kb on - strand, within GFF3764 at 256.232 kb on + strand, within GFF3764 at 256.232 kb on + strand, within GFF3764 at 256.233 kb on - strand, within GFF3764 at 256.233 kb on - strand, within GFF3764 at 256.233 kb on - strand, within GFF3764 at 256.233 kb on - strand, within GFF3764 at 256.233 kb on - strand, within GFF3764
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 253,408 + GFF3760 0.32 +0.1 253,408 + GFF3760 0.32 -0.6 253,408 + GFF3760 0.32 -0.6 253,408 + GFF3760 0.32 -0.9 253,408 + GFF3760 0.32 -0.4 253,408 + GFF3760 0.32 +0.9 253,408 + GFF3760 0.32 -0.7 253,408 + GFF3760 0.32 -0.5 253,408 + GFF3760 0.32 +0.8 253,408 + GFF3760 0.32 -0.3 253,408 + GFF3760 0.32 -0.2 253,408 + GFF3760 0.32 +1.0 253,409 - GFF3760 0.32 +0.2 253,409 - GFF3760 0.32 +1.2 253,409 - GFF3760 0.32 -0.3 253,409 - GFF3760 0.32 +0.1 253,409 - GFF3760 0.32 -0.2 253,409 - GFF3760 0.32 -0.1 253,409 - GFF3760 0.32 -0.2 253,409 - GFF3760 0.32 +0.1 253,409 - GFF3760 0.32 +0.4 253,582 + GFF3760 0.57 +0.2 253,583 - GFF3760 0.58 +0.1 253,714 + GFF3760 0.77 -0.1 253,714 + GFF3760 0.77 +1.1 253,714 + GFF3760 0.77 +0.4 253,714 + GFF3760 0.77 +0.2 253,715 - GFF3760 0.77 +1.0 253,715 - GFF3760 0.77 +2.1 253,715 - GFF3760 0.77 +1.8 253,715 - GFF3760 0.77 -0.2 253,715 - GFF3760 0.77 +1.8 253,715 - GFF3760 0.77 -0.5 253,715 - GFF3760 0.77 +0.5 253,843 + -1.7 253,843 + +0.4 253,843 + -1.1 253,843 + -0.9 253,843 + +0.1 253,843 + -0.5 253,843 + -1.4 253,844 - +0.2 253,844 - -0.5 253,844 - -0.9 253,844 - -1.0 254,659 - GFF3762 0.24 -0.6 254,659 - GFF3762 0.24 -0.4 254,892 + GFF3762 0.47 -0.2 254,893 - GFF3762 0.47 -0.9 255,108 + GFF3762 0.68 +0.3 255,108 + GFF3762 0.68 -1.9 255,109 - GFF3762 0.68 -1.1 255,109 - GFF3762 0.68 -0.7 255,456 + +0.3 255,457 - +2.2 255,524 + -1.0 255,525 - +0.4 255,677 + GFF3763 0.35 -1.1 255,677 + GFF3763 0.35 -0.7 255,678 - GFF3763 0.35 -0.4 255,752 + GFF3763 0.49 +0.8 255,752 + GFF3763 0.49 -0.8 255,752 + GFF3763 0.49 -0.3 255,752 + GFF3763 0.49 -1.2 255,752 + GFF3763 0.49 +0.3 255,752 + GFF3763 0.49 -0.3 255,752 + GFF3763 0.49 +1.1 255,753 - GFF3763 0.49 +0.6 255,753 - GFF3763 0.49 -0.4 255,753 - GFF3763 0.49 +0.2 255,753 - GFF3763 0.49 -0.9 255,753 - GFF3763 0.49 -0.2 255,753 - GFF3763 0.49 +0.8 255,753 - GFF3763 0.49 -0.7 255,770 + GFF3763 0.53 -1.8 255,770 + GFF3763 0.53 -0.1 255,770 + GFF3763 0.53 -0.5 255,771 - GFF3763 0.53 -1.0 255,771 - GFF3763 0.53 -0.8 255,771 - GFF3763 0.53 -0.9 255,771 - GFF3763 0.53 -1.1 256,040 + -0.1 256,040 + -1.2 256,040 + -0.4 256,040 + +0.5 256,041 - -0.2 256,041 - -0.1 256,041 - +0.1 256,041 - -0.3 256,041 - -2.0 256,112 + GFF3764 0.12 -1.0 256,112 + GFF3764 0.12 -0.4 256,112 + GFF3764 0.12 -0.1 256,113 - GFF3764 0.12 +0.0 256,211 + GFF3764 0.26 -1.8 256,212 - GFF3764 0.26 -0.2 256,212 - GFF3764 0.26 -0.5 256,212 - GFF3764 0.26 +0.5 256,212 - GFF3764 0.26 -0.3 256,212 - GFF3764 0.26 +0.2 256,232 + GFF3764 0.29 +0.8 256,232 + GFF3764 0.29 -0.1 256,233 - GFF3764 0.29 +0.1 256,233 - GFF3764 0.29 -0.1 256,233 - GFF3764 0.29 -1.9 256,233 - GFF3764 0.29 +0.2 256,233 - GFF3764 0.29 +2.4
Or see this region's nucleotide sequence