Strain Fitness in Variovorax sp. SCN45 around GFF3604

Experiment: Community=Kojac gum; Passage=1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3603 and GFF3604 are separated by 178 nucleotidesGFF3604 and GFF3605 are separated by 63 nucleotides GFF3603 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 116,360 to 117,208 GFF3603 GFF3604 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 117,387 to 118,589 GFF3604 GFF3605 - Esterase/lipase, at 118,653 to 119,594 GFF3605 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 116.418 kb on + strandat 116.443 kb on - strandat 116.443 kb on - strandat 116.443 kb on - strandat 116.469 kb on + strand, within GFF3603at 116.469 kb on + strand, within GFF3603at 116.470 kb on - strand, within GFF3603at 116.857 kb on + strand, within GFF3603at 116.979 kb on + strand, within GFF3603at 116.979 kb on + strand, within GFF3603at 116.979 kb on + strand, within GFF3603at 116.979 kb on + strand, within GFF3603at 116.979 kb on + strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 116.980 kb on - strand, within GFF3603at 117.202 kb on + strandat 117.339 kb on + strandat 117.339 kb on + strandat 117.340 kb on - strandat 117.340 kb on - strandat 117.340 kb on - strandat 117.517 kb on - strand, within GFF3604at 117.783 kb on + strand, within GFF3604at 117.783 kb on + strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.784 kb on - strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.930 kb on + strand, within GFF3604at 117.931 kb on - strand, within GFF3604at 117.931 kb on - strand, within GFF3604at 117.997 kb on - strand, within GFF3604at 118.095 kb on + strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.096 kb on - strand, within GFF3604at 118.587 kb on + strandat 118.750 kb on - strand, within GFF3605at 118.852 kb on - strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.896 kb on + strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.897 kb on - strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.899 kb on + strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 118.900 kb on - strand, within GFF3605at 119.066 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.209 kb on - strand, within GFF3605at 119.265 kb on + strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.266 kb on - strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.292 kb on + strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.293 kb on - strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.307 kb on + strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.308 kb on - strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.396 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.475 kb on + strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605at 119.476 kb on - strand, within GFF3605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
remove
116,418 + -1.1
116,443 - -0.5
116,443 - -0.5
116,443 - -1.7
116,469 + GFF3603 0.13 -0.6
116,469 + GFF3603 0.13 +0.5
116,470 - GFF3603 0.13 +1.8
116,857 + GFF3603 0.59 +0.2
116,979 + GFF3603 0.73 -0.2
116,979 + GFF3603 0.73 -0.7
116,979 + GFF3603 0.73 -0.1
116,979 + GFF3603 0.73 +0.3
116,979 + GFF3603 0.73 -0.4
116,980 - GFF3603 0.73 -0.0
116,980 - GFF3603 0.73 +0.1
116,980 - GFF3603 0.73 -0.8
116,980 - GFF3603 0.73 -0.2
116,980 - GFF3603 0.73 +0.6
116,980 - GFF3603 0.73 -0.7
116,980 - GFF3603 0.73 -0.3
116,980 - GFF3603 0.73 -1.6
117,202 + -1.1
117,339 + +0.6
117,339 + -1.3
117,340 - -0.1
117,340 - -1.4
117,340 - +0.4
117,517 - GFF3604 0.11 -1.0
117,783 + GFF3604 0.33 -0.7
117,783 + GFF3604 0.33 -0.1
117,784 - GFF3604 0.33 -2.1
117,784 - GFF3604 0.33 +0.5
117,784 - GFF3604 0.33 -0.3
117,930 + GFF3604 0.45 -0.5
117,930 + GFF3604 0.45 -0.4
117,930 + GFF3604 0.45 -0.0
117,930 + GFF3604 0.45 -0.3
117,931 - GFF3604 0.45 -0.1
117,931 - GFF3604 0.45 -0.7
117,997 - GFF3604 0.51 -0.7
118,095 + GFF3604 0.59 -0.3
118,096 - GFF3604 0.59 -0.3
118,096 - GFF3604 0.59 -0.1
118,096 - GFF3604 0.59 -1.1
118,587 + +0.8
118,750 - GFF3605 0.10 +1.8
118,852 - GFF3605 0.21 -0.6
118,896 + GFF3605 0.26 +0.0
118,896 + GFF3605 0.26 -0.7
118,896 + GFF3605 0.26 -0.1
118,897 - GFF3605 0.26 -0.4
118,897 - GFF3605 0.26 -0.4
118,897 - GFF3605 0.26 -1.1
118,897 - GFF3605 0.26 -0.3
118,897 - GFF3605 0.26 +1.2
118,897 - GFF3605 0.26 -0.8
118,897 - GFF3605 0.26 +0.1
118,897 - GFF3605 0.26 -0.3
118,899 + GFF3605 0.26 +0.2
118,899 + GFF3605 0.26 -0.5
118,899 + GFF3605 0.26 -0.5
118,899 + GFF3605 0.26 +0.2
118,899 + GFF3605 0.26 -0.9
118,899 + GFF3605 0.26 -0.0
118,899 + GFF3605 0.26 -0.1
118,900 - GFF3605 0.26 +0.4
118,900 - GFF3605 0.26 -1.1
118,900 - GFF3605 0.26 -0.2
118,900 - GFF3605 0.26 -1.4
119,066 - GFF3605 0.44 -0.6
119,209 - GFF3605 0.59 -0.0
119,209 - GFF3605 0.59 -0.1
119,209 - GFF3605 0.59 +0.3
119,265 + GFF3605 0.65 +0.0
119,266 - GFF3605 0.65 -1.4
119,266 - GFF3605 0.65 -1.0
119,292 + GFF3605 0.68 -0.0
119,292 + GFF3605 0.68 -0.9
119,292 + GFF3605 0.68 -0.7
119,292 + GFF3605 0.68 -0.1
119,293 - GFF3605 0.68 +0.2
119,293 - GFF3605 0.68 +0.7
119,293 - GFF3605 0.68 +0.2
119,293 - GFF3605 0.68 -0.4
119,307 + GFF3605 0.69 -0.5
119,307 + GFF3605 0.69 -0.1
119,307 + GFF3605 0.69 -0.4
119,307 + GFF3605 0.69 -0.8
119,308 - GFF3605 0.70 -0.5
119,308 - GFF3605 0.70 -1.2
119,308 - GFF3605 0.70 -0.3
119,308 - GFF3605 0.70 -1.1
119,308 - GFF3605 0.70 -1.7
119,308 - GFF3605 0.70 -0.2
119,308 - GFF3605 0.70 -1.3
119,396 + GFF3605 0.79 -1.6
119,396 + GFF3605 0.79 +0.1
119,396 + GFF3605 0.79 -0.4
119,475 + GFF3605 0.87 +0.2
119,475 + GFF3605 0.87 +0.3
119,475 + GFF3605 0.87 -0.0
119,475 + GFF3605 0.87 +0.1
119,476 - GFF3605 0.87 +0.0
119,476 - GFF3605 0.87 +0.2
119,476 - GFF3605 0.87 -0.6

Or see this region's nucleotide sequence