Strain Fitness in Variovorax sp. SCN45 around GFF3573

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3571 and GFF3572 overlap by 11 nucleotidesGFF3572 and GFF3573 are separated by 3 nucleotidesGFF3573 and GFF3574 are separated by 96 nucleotidesGFF3574 and GFF3575 overlap by 4 nucleotides GFF3571 - hypothetical protein, at 82,997 to 84,529 GFF3571 GFF3572 - Efflux ABC transporter, permease protein, at 84,519 to 85,346 GFF3572 GFF3573 - Efflux ABC transporter, ATP-binding protein, at 85,350 to 86,294 GFF3573 GFF3574 - hypothetical protein, at 86,391 to 87,233 GFF3574 GFF3575 - no description, at 87,230 to 87,916 GFF3575 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 84.577 kb on + strandat 84.577 kb on + strandat 84.578 kb on - strandat 84.766 kb on + strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.767 kb on - strand, within GFF3572at 84.769 kb on + strand, within GFF3572at 84.769 kb on + strand, within GFF3572at 84.770 kb on - strand, within GFF3572at 84.770 kb on - strand, within GFF3572at 84.784 kb on + strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 84.785 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.046 kb on - strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.114 kb on + strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.115 kb on - strand, within GFF3572at 85.352 kb on - strandat 85.480 kb on + strand, within GFF3573at 85.481 kb on - strand, within GFF3573at 85.570 kb on + strand, within GFF3573at 85.570 kb on + strand, within GFF3573at 85.570 kb on + strand, within GFF3573at 85.571 kb on - strand, within GFF3573at 85.963 kb on + strand, within GFF3573at 85.972 kb on + strand, within GFF3573at 85.972 kb on + strand, within GFF3573at 86.234 kb on - strandat 86.670 kb on + strand, within GFF3574at 86.670 kb on + strand, within GFF3574at 86.670 kb on + strand, within GFF3574at 86.677 kb on - strand, within GFF3574at 86.826 kb on + strand, within GFF3574at 86.826 kb on + strand, within GFF3574at 86.827 kb on - strand, within GFF3574at 86.827 kb on - strand, within GFF3574at 86.827 kb on - strand, within GFF3574at 86.827 kb on - strand, within GFF3574at 86.827 kb on - strand, within GFF3574at 86.847 kb on + strand, within GFF3574at 86.848 kb on - strand, within GFF3574at 86.848 kb on - strand, within GFF3574at 86.848 kb on - strand, within GFF3574at 86.848 kb on - strand, within GFF3574at 86.928 kb on + strand, within GFF3574at 86.928 kb on + strand, within GFF3574at 86.929 kb on - strand, within GFF3574

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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84,577 + -0.4
84,577 + -0.6
84,578 - -0.9
84,766 + GFF3572 0.30 -0.7
84,767 - GFF3572 0.30 -0.6
84,767 - GFF3572 0.30 -0.5
84,767 - GFF3572 0.30 +0.3
84,767 - GFF3572 0.30 +0.5
84,767 - GFF3572 0.30 -0.5
84,767 - GFF3572 0.30 +1.1
84,767 - GFF3572 0.30 +0.6
84,767 - GFF3572 0.30 -0.4
84,767 - GFF3572 0.30 -0.8
84,767 - GFF3572 0.30 -0.1
84,769 + GFF3572 0.30 -0.9
84,769 + GFF3572 0.30 -0.9
84,770 - GFF3572 0.30 +0.0
84,770 - GFF3572 0.30 -1.3
84,784 + GFF3572 0.32 +2.4
84,785 - GFF3572 0.32 -2.0
84,785 - GFF3572 0.32 -0.2
84,785 - GFF3572 0.32 -0.3
84,785 - GFF3572 0.32 -0.3
85,046 - GFF3572 0.64 -1.5
85,046 - GFF3572 0.64 +0.7
85,046 - GFF3572 0.64 -0.8
85,046 - GFF3572 0.64 -1.7
85,046 - GFF3572 0.64 -2.8
85,046 - GFF3572 0.64 -0.1
85,046 - GFF3572 0.64 +0.2
85,114 + GFF3572 0.72 -1.2
85,114 + GFF3572 0.72 -1.1
85,114 + GFF3572 0.72 -0.3
85,114 + GFF3572 0.72 +0.1
85,114 + GFF3572 0.72 -0.4
85,114 + GFF3572 0.72 -0.4
85,115 - GFF3572 0.72 +1.2
85,115 - GFF3572 0.72 -0.4
85,115 - GFF3572 0.72 -1.0
85,115 - GFF3572 0.72 -0.9
85,115 - GFF3572 0.72 -0.2
85,115 - GFF3572 0.72 +0.2
85,115 - GFF3572 0.72 -1.9
85,115 - GFF3572 0.72 -0.2
85,115 - GFF3572 0.72 -0.5
85,115 - GFF3572 0.72 -0.8
85,115 - GFF3572 0.72 +0.5
85,115 - GFF3572 0.72 -0.2
85,115 - GFF3572 0.72 -0.1
85,352 - -0.3
85,480 + GFF3573 0.14 +0.1
85,481 - GFF3573 0.14 -0.0
85,570 + GFF3573 0.23 -1.3
85,570 + GFF3573 0.23 +0.9
85,570 + GFF3573 0.23 -0.1
85,571 - GFF3573 0.23 -0.2
85,963 + GFF3573 0.65 -1.4
85,972 + GFF3573 0.66 +0.9
85,972 + GFF3573 0.66 +1.3
86,234 - -0.9
86,670 + GFF3574 0.33 -0.9
86,670 + GFF3574 0.33 -0.7
86,670 + GFF3574 0.33 -0.9
86,677 - GFF3574 0.34 +0.7
86,826 + GFF3574 0.52 +0.4
86,826 + GFF3574 0.52 -1.3
86,827 - GFF3574 0.52 -0.3
86,827 - GFF3574 0.52 +1.3
86,827 - GFF3574 0.52 +0.0
86,827 - GFF3574 0.52 +0.4
86,827 - GFF3574 0.52 -0.2
86,847 + GFF3574 0.54 -0.1
86,848 - GFF3574 0.54 -0.6
86,848 - GFF3574 0.54 +0.7
86,848 - GFF3574 0.54 +1.8
86,848 - GFF3574 0.54 -0.2
86,928 + GFF3574 0.64 -0.1
86,928 + GFF3574 0.64 -0.1
86,929 - GFF3574 0.64 -0.8

Or see this region's nucleotide sequence