Strain Fitness in Variovorax sp. SCN45 around GFF3569

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3568 and GFF3569 are separated by 168 nucleotidesGFF3569 and GFF3570 are separated by 89 nucleotidesGFF3570 and GFF3571 are separated by 222 nucleotides GFF3568 - Bll1370 protein, at 80,520 to 81,635 GFF3568 GFF3569 - Organic hydroperoxide resistance protein, at 81,804 to 82,229 GFF3569 GFF3570 - Organic hydroperoxide resistance transcriptional regulator, at 82,319 to 82,774 GFF3570 GFF3571 - hypothetical protein, at 82,997 to 84,529 GFF3571 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.920 kb on + strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.921 kb on - strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.962 kb on + strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.963 kb on - strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.980 kb on + strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 80.981 kb on - strand, within GFF3568at 81.217 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.244 kb on + strand, within GFF3568at 81.245 kb on - strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.253 kb on + strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.254 kb on - strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.352 kb on + strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.353 kb on - strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.358 kb on + strand, within GFF3568at 81.359 kb on - strand, within GFF3568at 81.457 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.469 kb on + strand, within GFF3568at 81.470 kb on - strand, within GFF3568at 81.470 kb on - strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.496 kb on + strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.497 kb on - strand, within GFF3568at 81.853 kb on + strand, within GFF3569at 82.201 kb on + strandat 82.201 kb on + strandat 82.201 kb on + strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.202 kb on - strandat 82.515 kb on + strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.516 kb on - strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.635 kb on + strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.636 kb on - strand, within GFF3570at 82.644 kb on + strand, within GFF3570at 82.644 kb on + strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.645 kb on - strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.677 kb on + strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.678 kb on - strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.707 kb on + strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.708 kb on - strand, within GFF3570at 82.787 kb on - strandat 82.824 kb on + strandat 82.824 kb on + strandat 82.825 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.842 kb on - strandat 82.900 kb on + strandat 82.900 kb on + strandat 82.901 kb on - strandat 83.034 kb on - strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.096 kb on + strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.097 kb on - strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.099 kb on + strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.100 kb on - strandat 83.102 kb on + strandat 83.174 kb on + strand, within GFF3571at 83.174 kb on + strand, within GFF3571at 83.175 kb on - strand, within GFF3571at 83.175 kb on - strand, within GFF3571at 83.210 kb on + strand, within GFF3571at 83.210 kb on + strand, within GFF3571

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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80,920 + GFF3568 0.36 -0.9
80,920 + GFF3568 0.36 -0.2
80,920 + GFF3568 0.36 +0.1
80,920 + GFF3568 0.36 -0.7
80,920 + GFF3568 0.36 -0.8
80,920 + GFF3568 0.36 +0.4
80,920 + GFF3568 0.36 +0.2
80,921 - GFF3568 0.36 +0.2
80,921 - GFF3568 0.36 +0.8
80,921 - GFF3568 0.36 +0.0
80,921 - GFF3568 0.36 -0.4
80,921 - GFF3568 0.36 -0.2
80,921 - GFF3568 0.36 +0.2
80,921 - GFF3568 0.36 -0.5
80,921 - GFF3568 0.36 -0.9
80,962 + GFF3568 0.40 -0.3
80,962 + GFF3568 0.40 +0.1
80,963 - GFF3568 0.40 -0.2
80,963 - GFF3568 0.40 -0.7
80,963 - GFF3568 0.40 -1.2
80,963 - GFF3568 0.40 +0.1
80,963 - GFF3568 0.40 +0.2
80,963 - GFF3568 0.40 +0.4
80,963 - GFF3568 0.40 -0.7
80,980 + GFF3568 0.41 -0.4
80,980 + GFF3568 0.41 -0.5
80,980 + GFF3568 0.41 -0.2
80,980 + GFF3568 0.41 -0.2
80,981 - GFF3568 0.41 +0.4
80,981 - GFF3568 0.41 -0.8
80,981 - GFF3568 0.41 -1.2
81,217 + GFF3568 0.62 +0.2
81,244 + GFF3568 0.65 -1.7
81,244 + GFF3568 0.65 +0.2
81,244 + GFF3568 0.65 -1.5
81,244 + GFF3568 0.65 -0.5
81,245 - GFF3568 0.65 -0.2
81,253 + GFF3568 0.66 -1.4
81,253 + GFF3568 0.66 +0.8
81,254 - GFF3568 0.66 +0.3
81,254 - GFF3568 0.66 -1.5
81,254 - GFF3568 0.66 +0.2
81,254 - GFF3568 0.66 +0.6
81,352 + GFF3568 0.75 +0.4
81,352 + GFF3568 0.75 +0.1
81,353 - GFF3568 0.75 -0.8
81,353 - GFF3568 0.75 -0.5
81,358 + GFF3568 0.75 -0.1
81,358 + GFF3568 0.75 -0.1
81,359 - GFF3568 0.75 -0.6
81,457 + GFF3568 0.84 -0.6
81,469 + GFF3568 0.85 -0.0
81,469 + GFF3568 0.85 -0.8
81,469 + GFF3568 0.85 +0.4
81,469 + GFF3568 0.85 -0.6
81,469 + GFF3568 0.85 -0.2
81,469 + GFF3568 0.85 +0.2
81,470 - GFF3568 0.85 -0.8
81,470 - GFF3568 0.85 -1.6
81,496 + GFF3568 0.87 -0.6
81,496 + GFF3568 0.87 +0.0
81,496 + GFF3568 0.87 +0.6
81,497 - GFF3568 0.88 +0.6
81,497 - GFF3568 0.88 -0.1
81,497 - GFF3568 0.88 +0.1
81,853 + GFF3569 0.12 -0.9
82,201 + -0.7
82,201 + -0.3
82,201 + -0.6
82,202 - -0.9
82,202 - -1.8
82,202 - -0.8
82,202 - -0.6
82,202 - -1.7
82,202 - +0.2
82,202 - -0.4
82,202 - -0.4
82,202 - -0.4
82,515 + GFF3570 0.43 -0.0
82,516 - GFF3570 0.43 -0.3
82,516 - GFF3570 0.43 +0.1
82,516 - GFF3570 0.43 -0.7
82,516 - GFF3570 0.43 -0.6
82,516 - GFF3570 0.43 -0.1
82,635 + GFF3570 0.69 -1.5
82,635 + GFF3570 0.69 +0.1
82,635 + GFF3570 0.69 +1.8
82,636 - GFF3570 0.70 +0.1
82,636 - GFF3570 0.70 +0.2
82,636 - GFF3570 0.70 +0.6
82,636 - GFF3570 0.70 -0.1
82,644 + GFF3570 0.71 -0.3
82,644 + GFF3570 0.71 +0.2
82,645 - GFF3570 0.71 -0.3
82,645 - GFF3570 0.71 -1.2
82,645 - GFF3570 0.71 -0.9
82,677 + GFF3570 0.79 -0.9
82,677 + GFF3570 0.79 -1.3
82,677 + GFF3570 0.79 +0.0
82,678 - GFF3570 0.79 +0.5
82,678 - GFF3570 0.79 -0.8
82,678 - GFF3570 0.79 +0.0
82,678 - GFF3570 0.79 -0.4
82,678 - GFF3570 0.79 -0.8
82,707 + GFF3570 0.85 +0.3
82,707 + GFF3570 0.85 -0.2
82,707 + GFF3570 0.85 -1.3
82,707 + GFF3570 0.85 +0.2
82,707 + GFF3570 0.85 +0.8
82,708 - GFF3570 0.85 +0.7
82,708 - GFF3570 0.85 +0.3
82,708 - GFF3570 0.85 +0.2
82,708 - GFF3570 0.85 -0.7
82,787 - -0.4
82,824 + -0.3
82,824 + +0.5
82,825 - -0.3
82,842 - -0.0
82,842 - -0.3
82,842 - -0.6
82,842 - -0.5
82,900 + -0.2
82,900 + -0.2
82,901 - -1.4
83,034 - -1.3
83,096 + -0.8
83,096 + -0.0
83,096 + +0.8
83,096 + -1.4
83,097 - -0.8
83,097 - -1.2
83,097 - +0.2
83,097 - -0.7
83,099 + +0.9
83,099 + -0.2
83,099 + +0.4
83,099 + +0.2
83,099 + -0.2
83,099 + +0.3
83,099 + +1.8
83,099 + -0.1
83,100 - +0.0
83,100 - +0.9
83,100 - +1.8
83,100 - +0.2
83,100 - -0.3
83,100 - -1.0
83,100 - -2.1
83,100 - +0.6
83,102 + -2.4
83,174 + GFF3571 0.12 -0.8
83,174 + GFF3571 0.12 +0.1
83,175 - GFF3571 0.12 -0.3
83,175 - GFF3571 0.12 -0.0
83,210 + GFF3571 0.14 -1.4
83,210 + GFF3571 0.14 -0.1

Or see this region's nucleotide sequence