Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3558 and GFF3559 are separated by 3 nucleotides GFF3559 and GFF3560 overlap by 11 nucleotides
GFF3558 - hypothetical protein, at 69,121 to 70,251
GFF3558
GFF3559 - no description, at 70,255 to 71,031
GFF3559
GFF3560 - hypothetical protein, at 71,021 to 72,040
GFF3560
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 69.398 kb on + strand, within GFF3558 at 69.513 kb on - strand, within GFF3558 at 69.513 kb on - strand, within GFF3558 at 69.609 kb on - strand, within GFF3558 at 69.855 kb on - strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.004 kb on + strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.005 kb on - strand, within GFF3558 at 70.070 kb on + strand, within GFF3558 at 70.071 kb on - strand, within GFF3558 at 70.232 kb on + strand at 70.233 kb on - strand at 70.233 kb on - strand at 70.233 kb on - strand at 70.233 kb on - strand at 70.577 kb on + strand, within GFF3559 at 70.577 kb on + strand, within GFF3559 at 70.577 kb on + strand, within GFF3559 at 70.577 kb on + strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.578 kb on - strand, within GFF3559 at 70.862 kb on + strand, within GFF3559 at 71.172 kb on + strand, within GFF3560 at 71.172 kb on + strand, within GFF3560 at 71.172 kb on + strand, within GFF3560 at 71.172 kb on + strand, within GFF3560 at 71.172 kb on + strand, within GFF3560 at 71.172 kb on + strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.173 kb on - strand, within GFF3560 at 71.269 kb on - strand, within GFF3560 at 71.604 kb on + strand, within GFF3560 at 71.604 kb on + strand, within GFF3560 at 71.604 kb on + strand, within GFF3560 at 71.604 kb on + strand, within GFF3560 at 71.605 kb on - strand, within GFF3560 at 71.605 kb on - strand, within GFF3560 at 71.605 kb on - strand, within GFF3560 at 71.788 kb on - strand, within GFF3560
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 69,398 + GFF3558 0.24 -0.8 69,513 - GFF3558 0.35 -1.0 69,513 - GFF3558 0.35 +0.0 69,609 - GFF3558 0.43 -0.4 69,855 - GFF3558 0.65 -0.6 70,004 + GFF3558 0.78 -2.3 70,004 + GFF3558 0.78 -0.5 70,004 + GFF3558 0.78 -0.1 70,004 + GFF3558 0.78 -0.2 70,004 + GFF3558 0.78 +0.0 70,004 + GFF3558 0.78 -1.2 70,004 + GFF3558 0.78 +0.2 70,004 + GFF3558 0.78 -0.1 70,004 + GFF3558 0.78 -0.2 70,004 + GFF3558 0.78 +0.1 70,004 + GFF3558 0.78 +0.4 70,004 + GFF3558 0.78 -0.1 70,004 + GFF3558 0.78 +0.2 70,004 + GFF3558 0.78 -0.7 70,004 + GFF3558 0.78 -0.3 70,005 - GFF3558 0.78 -0.3 70,005 - GFF3558 0.78 -0.6 70,005 - GFF3558 0.78 -0.0 70,005 - GFF3558 0.78 -0.4 70,005 - GFF3558 0.78 -0.3 70,005 - GFF3558 0.78 -0.8 70,005 - GFF3558 0.78 -0.7 70,005 - GFF3558 0.78 +0.2 70,070 + GFF3558 0.84 +0.7 70,071 - GFF3558 0.84 -1.2 70,232 + -0.3 70,233 - -0.2 70,233 - -1.5 70,233 - +0.3 70,233 - -2.6 70,577 + GFF3559 0.41 -0.2 70,577 + GFF3559 0.41 -0.2 70,577 + GFF3559 0.41 +1.5 70,577 + GFF3559 0.41 -0.3 70,578 - GFF3559 0.42 -0.6 70,578 - GFF3559 0.42 +0.3 70,578 - GFF3559 0.42 -0.3 70,578 - GFF3559 0.42 +0.7 70,578 - GFF3559 0.42 +0.1 70,578 - GFF3559 0.42 -0.5 70,578 - GFF3559 0.42 -0.6 70,862 + GFF3559 0.78 +0.2 71,172 + GFF3560 0.15 +0.2 71,172 + GFF3560 0.15 -0.1 71,172 + GFF3560 0.15 -0.4 71,172 + GFF3560 0.15 +0.0 71,172 + GFF3560 0.15 +0.4 71,172 + GFF3560 0.15 -3.1 71,173 - GFF3560 0.15 -0.9 71,173 - GFF3560 0.15 +0.3 71,173 - GFF3560 0.15 -0.2 71,173 - GFF3560 0.15 +0.1 71,173 - GFF3560 0.15 -1.1 71,173 - GFF3560 0.15 -1.6 71,173 - GFF3560 0.15 -0.2 71,173 - GFF3560 0.15 -2.1 71,269 - GFF3560 0.24 -0.3 71,604 + GFF3560 0.57 +0.2 71,604 + GFF3560 0.57 +0.2 71,604 + GFF3560 0.57 -2.4 71,604 + GFF3560 0.57 +0.2 71,605 - GFF3560 0.57 -1.1 71,605 - GFF3560 0.57 -0.0 71,605 - GFF3560 0.57 -0.5 71,788 - GFF3560 0.75 -0.5
Or see this region's nucleotide sequence